WEBVTT - Ebola: Preventing the Next Pandemic

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<v Speaker 1>In twenty fourteen, a cluster of Ebola cases emerged in

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<v Speaker 1>Guinea in West Africa. It was the start of what

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<v Speaker 1>would become the largest Ebola outbreak on record. Ebola is

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<v Speaker 1>one of the most deadly pathogens on Earth, and it

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<v Speaker 1>started to move through densely populated cities at the time.

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<v Speaker 1>Two scientists, Christian Happy and Party Sabbetti, were already fighting

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<v Speaker 1>other infectious diseases in West Africa, and when Ebola hit,

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<v Speaker 1>they threw everything they had at containing the outbreak, even

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<v Speaker 1>if it meant putting themselves in danger.

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<v Speaker 2>I might get Itbora, but my thinking is is better

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<v Speaker 2>for me and a few orders to die and saved

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<v Speaker 2>millions of people than be selfish and lefty. Disease spread

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<v Speaker 2>and eventually paid a high price by seeing menials of

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<v Speaker 2>people dying around me.

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<v Speaker 1>Today, on the show the twenty fourteen Ebola Outbreak and

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<v Speaker 1>how the lessons we learned from that moment may help

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<v Speaker 1>us prevent future pandemics. I'm Jacob Goldstein and this is Incubation,

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<v Speaker 1>a show about viruses. First today is my conversation with

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<v Speaker 1>Christian Happy. I talked with him about his work hunting viruses,

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<v Speaker 1>and in particular about his role in fighting the twenty

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<v Speaker 1>fourteen Ebola outbreak. Christian grew up in Cameroon and he

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<v Speaker 1>decided at an early age to become a scientist. He

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<v Speaker 1>was inspired by malaria.

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<v Speaker 2>I grew up in the rainforest area and there was

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<v Speaker 2>a lot of malaria there. I grew up knowing that

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<v Speaker 2>my mother has lost two of my siblings to malaria.

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<v Speaker 2>I think the day I met up my mind to

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<v Speaker 2>become a scientist was when I was about eight nine

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<v Speaker 2>years and I got one of the worst part of

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<v Speaker 2>maya that I could ever remember, and my mom took

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<v Speaker 2>me to the hospital. I got treated by nouns and

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<v Speaker 2>then on the way back, she stopped under a tree

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<v Speaker 2>and I was lying against a tree, and I do

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<v Speaker 2>remember asking my mom, why was that sick?

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<v Speaker 3>Why is it that there's no.

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<v Speaker 2>Treatment or cure or anything to prevent this disease from

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<v Speaker 2>hitting me this hard? And our response was I have

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<v Speaker 2>no idea, And that day I remember telling her and

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<v Speaker 2>when I grew up, I will find a cure.

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<v Speaker 1>Christian Happy did in fact grow up to study malaria

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<v Speaker 1>and other infectious diseases that are common in West Africa.

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<v Speaker 1>He got a PhD in molecular parasitology, and then he

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<v Speaker 1>did a postdoc at Harvard. He was at Harvard when

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<v Speaker 1>he met Pardis Sabbetti, the other scientist will hear from

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<v Speaker 1>on today's show. In two thousand and eight, Christian started

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<v Speaker 1>working on a disease called loss of fever. That experience

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<v Speaker 1>laid the groundwork for the work he would do when

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<v Speaker 1>the Ebola outbreak came. Loss of fever, though not as

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<v Speaker 1>well known as Ebola, is deadly and it's endemic in

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<v Speaker 1>West Africa.

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<v Speaker 2>We find ourselves in a place where whole families have

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<v Speaker 2>been wiped out by these virus. I realized that at

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<v Speaker 2>that point that hospital is a nogal area. I'm being

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<v Speaker 2>told that the place is called like a burier ground.

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<v Speaker 2>When you go there, you get infected by this mysterious disease.

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<v Speaker 2>There's no care for, it's almost impossible to diagnose, and

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<v Speaker 2>then you die. And the first thing I did when

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<v Speaker 2>I get to that place is to ask a lot

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<v Speaker 2>of questions, and I realized, one, they don't have diagnostics.

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<v Speaker 2>Two they need to be trained, and then thirdly we

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<v Speaker 2>need to actually make sure that we provide them with

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<v Speaker 2>the necessary drugs and medicine in order to actually help

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<v Speaker 2>stop this while we're doing the research and guess what,

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<v Speaker 2>I leave the place and then come back to Boston,

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<v Speaker 2>have a discussion with by this and we started guarding

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<v Speaker 2>the resources to go there. And then within a few

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<v Speaker 2>months we set up the first molecular diagnostics for last

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<v Speaker 2>of fever lab. Molecular diagnostics Labs for lasta fever in Nigeria.

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<v Speaker 1>Okay, you and parties, you set up this a lab

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<v Speaker 1>at a hospital. It lets the people at the hospital

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<v Speaker 1>diagnose loss of fever in patients there. What happens next.

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<v Speaker 2>We cut down the test fatality rate in the hospital

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<v Speaker 2>from ninety percent to about twenty three point eight percent.

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<v Speaker 2>Why because when they used to have disease outbreak, people

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<v Speaker 2>will come from Germany or a team of researcher will

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<v Speaker 2>come from Germany, take the sample to Germany and then

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<v Speaker 2>they will have the result only about a month three

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<v Speaker 2>weeks to a month after.

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<v Speaker 1>So there were people who had this potentially fatal disease

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<v Speaker 1>in a hospital in rural Nigeria and in order to

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<v Speaker 1>test for the disease, people had to take a sample

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<v Speaker 1>from the patients from rural Nigeria to Germany and do

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<v Speaker 1>the test.

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<v Speaker 2>Yes to Germany, Yes, and if you take about a

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<v Speaker 2>month for them to have the result.

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<v Speaker 1>And would the person be dead by then.

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<v Speaker 2>By the time they get the result, ninety percent of

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<v Speaker 2>those people were dead. But the introduction we brought the

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<v Speaker 2>diagnostics by the patient bedside, that's really what our very

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<v Speaker 2>first huge impact.

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<v Speaker 1>And so that's the just a simple, simple idea, which

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<v Speaker 1>is like, if somebody might have a deadly disease, let's

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<v Speaker 1>figure it out right here, rather than sending a simple

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<v Speaker 1>to Germany.

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<v Speaker 2>That's the whole idea, normal senning simple to Germany, doing

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<v Speaker 2>it within Africa, using the data within Africa to inform

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<v Speaker 2>policy makers in real time so that they can use

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<v Speaker 2>the data to respond faster.

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<v Speaker 1>So now let's jump forward to twenty fourteen and we

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<v Speaker 1>have what's gonna become the biggest recorded ebola outbreak in history.

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<v Speaker 1>Tell me about that.

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<v Speaker 2>The Ebola outbreak start in the remote part of Guinea

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<v Speaker 2>and at that time, the world is looking away. The

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<v Speaker 2>disease is crawling and the disease is killing people. And

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<v Speaker 2>the first thing we did at the time is sit

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<v Speaker 2>down and think about what we can do to support

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<v Speaker 2>the response. Can we activate this This is so system

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<v Speaker 2>that we were setting up through this epidemic, and we

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<v Speaker 2>identify diagnostics as the weakest link of all of the

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<v Speaker 2>things of the chain.

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<v Speaker 3>And the reason is being simple.

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<v Speaker 2>If you cannot diagnose a disease, it's going to be

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<v Speaker 2>very difficult for you to contain it because you need

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<v Speaker 2>to know what you're trying to contain.

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<v Speaker 1>You need to know who's got the infectious disease, and.

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<v Speaker 3>You need to go who has infection.

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<v Speaker 2>And we decided then to start training people in Syralllion

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<v Speaker 2>because Syrillleon was neighbor to Guinea, and we train people

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<v Speaker 2>in Nigeria because Nigeria being the most popular country in

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<v Speaker 2>West Africa. But then the second thing is also the

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<v Speaker 2>fact that we were already working in Syraleion on last fear.

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<v Speaker 2>So those two countries where we're working, we prepare the

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<v Speaker 2>ground by training people on how to diagnose a bowler.

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<v Speaker 2>We also go quickly to develop a molecular diagnostics test

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<v Speaker 2>for a bowler. We test and do the validation in

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<v Speaker 2>the lab. Around May twenty twenty fourteen, we confirmed the

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<v Speaker 2>first case.

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<v Speaker 3>Of boler in Seria leone spreading out of Guinea.

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<v Speaker 1>So the disease is spreading. It has started in Guinea.

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<v Speaker 1>Now you've identified it in Sierra Leone, but it hasn't

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<v Speaker 1>yet reached Nigeria. Yes, you are in Nigeria. Yeah, and

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<v Speaker 1>a passenger arrives at Legos Airport with a suspected case

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<v Speaker 1>of ebola, first suspected case in the country. You're there, Yes,

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<v Speaker 1>what do you do at that moment? That day?

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<v Speaker 2>On that day, I got a call, a very strange

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<v Speaker 2>call around eight four pm and that call is coming

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<v Speaker 2>from one of the foremost virologists in Africa. He calls

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<v Speaker 2>me and he says there is a suspectic case of

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<v Speaker 2>a boler in Legos. There's a lot of argument about

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<v Speaker 2>whether it is or it is not. But I've told

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<v Speaker 2>the public health authority is that the only person that

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<v Speaker 2>will give me a result, and I believe is Christian

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<v Speaker 2>because I know his ability.

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<v Speaker 1>They're saying like we were one person in this country

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<v Speaker 1>to do the test, and that person is.

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<v Speaker 2>You, right, I mean, the stexts are very high. And

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<v Speaker 2>he tells me what do we do? And I told

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<v Speaker 2>him that evening, I am driving from a house to

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<v Speaker 2>the lab that they should send the sample. We'll meet

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<v Speaker 2>in my lab and I'll collect the sample and then

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<v Speaker 2>do the testing that night.

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<v Speaker 1>And what are you thinking. What do you think when

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<v Speaker 1>you get this call?

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<v Speaker 2>Of course, it sends you chills in your vertebrate because

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<v Speaker 2>this is a suspected case in a country of two

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<v Speaker 2>hundred and thirty million people. So if this spread, the

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<v Speaker 2>consequences are going to be very disastrous, not only for Nigeria,

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<v Speaker 2>for Africa and then the rest of the world.

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<v Speaker 1>And this patient collapsed at the airport. The nightmare scenario.

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<v Speaker 2>He collapsed at the airport, He's taken into a hospital,

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<v Speaker 2>He's probably been handled by people with are suspicion, and

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<v Speaker 2>I am to face it. I was going to deal

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<v Speaker 2>with the beasts, which means I may not come back

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<v Speaker 2>home alive because we don't have a BIS facility, be.

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<v Speaker 1>A self force like the super safe High Security facility.

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<v Speaker 3>The super safe HAST best safety level.

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<v Speaker 1>Four and you don't have that. So you mean by

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<v Speaker 1>going to do this test, you might get a bolder.

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<v Speaker 3>I might get a border.

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<v Speaker 2>But my thinking is it's better for me and a

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<v Speaker 2>few orders to die and save millions of people. If

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<v Speaker 2>it is confirmed, then be selfish and left the disease

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<v Speaker 2>spread and eventually paid a high price by seeing millions

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<v Speaker 2>of people dying around me. So I turn to my

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<v Speaker 2>wife and I tell hell, this is a situation. I

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<v Speaker 2>want to go do this. If I don't make it

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<v Speaker 2>back home, take care of the children, it to be okay.

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<v Speaker 2>And she said, I'll pray for you. You'll be back.

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<v Speaker 2>I know this is what you've always wanted to do.

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<v Speaker 2>You always want to work for the people. You always

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<v Speaker 2>want to save lives. I left home with a back,

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<v Speaker 2>with a change of clothes and I drive on that

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<v Speaker 2>road is a lonely road in Nigeria at time, one

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<v Speaker 2>of the most dangerous ord in Nigeria. But I drave

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<v Speaker 2>alone in the night and I go to the lab

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<v Speaker 2>and then the ambulance come from Legos and meet me.

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<v Speaker 2>And I went into the place. We have a bs

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<v Speaker 2>A level too. It's a laminar. I mean'd be very

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<v Speaker 2>low level of contentment and we prepared zero point five

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<v Speaker 2>percent bleach and I will all put up our ppees

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<v Speaker 2>and we're in a very tiny small room without air conditioners.

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<v Speaker 3>I'm sweating like a pig into the ppe.

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<v Speaker 2>My eyes and fast side is fuggy because you know

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<v Speaker 2>of the heat.

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<v Speaker 1>Your safety goggles are fugging.

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<v Speaker 2>I'm wearing the safety goggle and that is fugging up

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<v Speaker 2>and then I'm really looking through that and then working

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<v Speaker 2>in the night very carefully.

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<v Speaker 1>And it's what, you have a blood simple I got

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<v Speaker 1>a blood sample, yeah, okay, and ran the first test

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<v Speaker 1>and then the first test turned out to be positive.

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<v Speaker 3>That really sends chills in my spine.

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<v Speaker 1>I mean, this disease is transmitted through blood, and you're

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<v Speaker 1>sitting there working with the blood.

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<v Speaker 3>Yeah.

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<v Speaker 2>But my mind is like started running through the number

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<v Speaker 2>of people that came across this guy. How many people

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<v Speaker 2>are being exposed? You asked yourself many questions. I repeated

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<v Speaker 2>the test just for confirmation purpose, and then that test

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<v Speaker 2>actually the result is consistent, and were repeated it the

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<v Speaker 2>tod time and then in the morning around like six

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<v Speaker 2>o'clock the result turns out to be positive.

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<v Speaker 3>Then I know that while we got a problem in

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<v Speaker 3>the country.

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<v Speaker 2>I do court the then Minister of Health and I

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<v Speaker 2>told him that, sir, we have a baller in the country.

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<v Speaker 2>I remember for about a minute when I told him this,

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<v Speaker 2>the line was quiet. And then the question was how

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<v Speaker 2>do we organize ourselves the reality that at that time

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<v Speaker 2>were really not organized.

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<v Speaker 1>What do you and your colleagues do over the coming days.

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<v Speaker 2>We start saying Okay, when I know that this case

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<v Speaker 2>is confirmed, we start thinking about who are the people

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<v Speaker 2>that came in contact with this case.

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<v Speaker 1>So people are like going door to door, who are

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<v Speaker 1>doing knocking on doors saying you need to come with me.

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<v Speaker 1>You were exposed to a bowler.

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<v Speaker 2>Basically, that is exactly what im because we form immediately

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<v Speaker 2>form an emergency operation center. Were actually create a group

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<v Speaker 2>that is tracking down with these individuals, and that group

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<v Speaker 2>is led by a general and we're getting people out

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<v Speaker 2>of their homes. Once we tuck you down, you know

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<v Speaker 2>we're in contact. We're taking them to a solution center.

0:12:16.120 --> 0:12:18.600
<v Speaker 2>And this is how we're actually picking the cases much

0:12:18.640 --> 0:12:21.640
<v Speaker 2>more earlier before the cases become serious and we start

0:12:21.679 --> 0:12:22.320
<v Speaker 2>managing them.

0:12:22.840 --> 0:12:25.960
<v Speaker 1>So this is at this moment when there is this

0:12:27.120 --> 0:12:31.400
<v Speaker 1>large outbreak in several countries near Nigeria. You have this

0:12:31.480 --> 0:12:35.760
<v Speaker 1>first case in Nigeria. You're trying to do testing and

0:12:35.800 --> 0:12:39.199
<v Speaker 1>tracing really aggressively in Nigeria. Does it work?

0:12:39.840 --> 0:12:40.640
<v Speaker 3>It works?

0:12:41.240 --> 0:12:41.760
<v Speaker 1>It works.

0:12:42.000 --> 0:12:45.040
<v Speaker 2>It works because we're able to issolate as many cases

0:12:45.080 --> 0:12:48.360
<v Speaker 2>as possible. We're basically also providing the results the test

0:12:48.480 --> 0:12:51.040
<v Speaker 2>result in the E real time and sharing these with

0:12:51.080 --> 0:12:54.400
<v Speaker 2>public health authorities and guess what Nigeria comes out of

0:12:54.440 --> 0:12:58.200
<v Speaker 2>it with only twenty cases and AED debt and in

0:12:58.200 --> 0:13:02.760
<v Speaker 2>the country of two and tenty million, that is unprecedented.

0:13:02.840 --> 0:13:06.040
<v Speaker 3>It's unbelievable. But then it shows that it works.

0:13:06.440 --> 0:13:09.160
<v Speaker 2>We showed in the context of our program that you

0:13:09.240 --> 0:13:11.199
<v Speaker 2>need two major things to contain an epidemic.

0:13:11.559 --> 0:13:13.240
<v Speaker 3>One is speed, that is.

0:13:13.160 --> 0:13:16.160
<v Speaker 2>Your speed of execution, your speed of response, your speed

0:13:16.200 --> 0:13:17.680
<v Speaker 2>of characterizing the virus.

0:13:17.920 --> 0:13:19.679
<v Speaker 3>And then secondly is accuracy.

0:13:19.960 --> 0:13:22.559
<v Speaker 2>If you do this with accuracy, you should be able

0:13:22.600 --> 0:13:23.679
<v Speaker 2>to contain any epidemic.

0:13:24.360 --> 0:13:27.520
<v Speaker 1>Thank you so much for your time. I really appreciate it.

0:13:27.600 --> 0:13:30.480
<v Speaker 3>Thank you.

0:13:31.880 --> 0:13:34.720
<v Speaker 1>Christian Happy is the director of the African Center of

0:13:34.760 --> 0:13:40.960
<v Speaker 1>Excellence for Genomics of Infectious Diseases at Redeemers University in Ede, Nigeria.

0:13:51.240 --> 0:13:53.360
<v Speaker 1>So for the next part of the show, we're going

0:13:53.440 --> 0:13:56.240
<v Speaker 1>to talk to parties, yep. And I'm just curious to

0:13:56.280 --> 0:13:59.200
<v Speaker 1>hear you talk about your friendship with her, your work

0:13:59.240 --> 0:13:59.559
<v Speaker 1>with her.

0:14:00.720 --> 0:14:04.079
<v Speaker 2>I do call parties my academic betaph I will say

0:14:04.679 --> 0:14:07.520
<v Speaker 2>it is a friendship that is transcending, you know, the

0:14:07.640 --> 0:14:10.120
<v Speaker 2>RUSSA that we're doing, it will become family.

0:14:10.720 --> 0:14:12.760
<v Speaker 1>For the second half of today's show, I talked with

0:14:12.880 --> 0:14:17.400
<v Speaker 1>Pardise Sabbetti. Partise is a computational geneticist. She has an

0:14:17.520 --> 0:14:20.440
<v Speaker 1>MD from Harvard and a doctorate from Oxford and she

0:14:20.560 --> 0:14:23.640
<v Speaker 1>runs a lab at the Broad Institute. And she says

0:14:23.800 --> 0:14:25.760
<v Speaker 1>she and Christian have been through a lot together.

0:14:26.400 --> 0:14:28.640
<v Speaker 4>Well, Christian is like, you know, we call each other

0:14:28.640 --> 0:14:31.000
<v Speaker 4>our academic better haves. That's what he always says. And

0:14:31.040 --> 0:14:33.360
<v Speaker 4>I always calling my writer Di because we've been in

0:14:33.400 --> 0:14:38.080
<v Speaker 4>situations where it's like, what are we even in? You know,

0:14:38.840 --> 0:14:41.280
<v Speaker 4>We've been in some really banana situations together.

0:14:41.800 --> 0:14:44.640
<v Speaker 1>Parties and Christian's work on malaria and loss of fever

0:14:45.160 --> 0:14:49.720
<v Speaker 1>and ebola has made them really world experts on how

0:14:49.760 --> 0:14:53.520
<v Speaker 1>to prevent outbreaks. Later in the show, I'll talk to

0:14:53.560 --> 0:14:57.760
<v Speaker 1>Parties about her book on culture and Epidemics, but we

0:14:57.880 --> 0:15:01.720
<v Speaker 1>started by discussing this outbreak surveillance system that she and

0:15:01.800 --> 0:15:05.320
<v Speaker 1>Christian have developed to reduce the risk of future pandemics.

0:15:05.800 --> 0:15:08.560
<v Speaker 1>It's called Sentinel, and it grew out of the work

0:15:08.760 --> 0:15:11.320
<v Speaker 1>that Christian and Parties did on loss of virus and

0:15:11.360 --> 0:15:14.480
<v Speaker 1>in bola. Sentinel was created to solve a couple of

0:15:14.560 --> 0:15:19.480
<v Speaker 1>deceptively simple problems, including getting fast, accurate tests to the

0:15:19.520 --> 0:15:21.440
<v Speaker 1>places where people are getting.

0:15:21.120 --> 0:15:25.640
<v Speaker 4>Sick we need detection of pathogens wherever they're occurring, because

0:15:25.680 --> 0:15:27.840
<v Speaker 4>these pathogens all look the same and we don't know,

0:15:28.120 --> 0:15:30.520
<v Speaker 4>you know, like what's brewing inside of us until it's

0:15:30.520 --> 0:15:34.720
<v Speaker 4>pretty late. It's no coincidence that every time we identified

0:15:35.280 --> 0:15:38.360
<v Speaker 4>a virus in the world it was when somebody had

0:15:38.400 --> 0:15:41.320
<v Speaker 4>access to testing, right, Like, for most of these viruses,

0:15:41.400 --> 0:15:43.560
<v Speaker 4>we don't see them, and so LASA viruses won't the

0:15:43.560 --> 0:15:45.520
<v Speaker 4>one we started looking at, and everywhere we looked we

0:15:45.560 --> 0:15:48.840
<v Speaker 4>found it. Like in twenty twelve, we were saying, we

0:15:48.960 --> 0:15:52.360
<v Speaker 4>think Ebola and Lasa are circulating undetected in West Africa,

0:15:52.400 --> 0:15:54.240
<v Speaker 4>and if we just set up the capability to test

0:15:54.240 --> 0:15:56.480
<v Speaker 4>for it, we'd find it. And we are already doing that.

0:15:56.840 --> 0:15:59.800
<v Speaker 4>When Abola appeared in West Africa, it appeared in neighboring

0:16:00.920 --> 0:16:02.880
<v Speaker 4>So what exactly.

0:16:02.400 --> 0:16:05.440
<v Speaker 1>Were you setting up just just before that twenty fourteen

0:16:05.440 --> 0:16:06.320
<v Speaker 1>Ebola outbreak.

0:16:06.760 --> 0:16:09.560
<v Speaker 4>We essentially set up the capacity to train individuals on

0:16:09.600 --> 0:16:13.240
<v Speaker 4>the continent to do diagnostic testing and the tools to

0:16:13.280 --> 0:16:16.440
<v Speaker 4>share that information and track pathogens. So it was basically

0:16:16.520 --> 0:16:19.200
<v Speaker 4>a training program as well as the tools and technology

0:16:19.240 --> 0:16:22.480
<v Speaker 4>to detect pathogens around West Africa at the time.

0:16:23.080 --> 0:16:25.560
<v Speaker 1>And then how did that play out as the Ebola

0:16:25.600 --> 0:16:26.960
<v Speaker 1>outbreak emerged.

0:16:27.560 --> 0:16:31.520
<v Speaker 4>Honestly, our timing is kind of wild in that we were,

0:16:31.680 --> 0:16:33.840
<v Speaker 4>you know, working and working and working to get the grant.

0:16:34.040 --> 0:16:37.080
<v Speaker 4>We got the grant in like December of twenty thirteen,

0:16:37.120 --> 0:16:40.920
<v Speaker 4>and we launched the program in March of twenty fourteen.

0:16:41.440 --> 0:16:44.560
<v Speaker 4>And right at that moment, like literally the program launched,

0:16:44.560 --> 0:16:47.120
<v Speaker 4>we're like meeting with the World Bank leadership, you know there,

0:16:48.000 --> 0:16:51.920
<v Speaker 4>and that was when they identified Ebola and Guinea. We're

0:16:51.960 --> 0:16:54.840
<v Speaker 4>like just hearing Ebolas here and we're there. The frustration

0:16:55.040 --> 0:16:58.480
<v Speaker 4>is deep. It's exciting because at least we're there, but

0:16:58.520 --> 0:17:01.120
<v Speaker 4>we haven't even set up anything yet. But we were

0:17:01.160 --> 0:17:03.240
<v Speaker 4>able to move so we were able to set up

0:17:03.280 --> 0:17:07.640
<v Speaker 4>diagnostics March twenty fourteen. You know, the cases were detected

0:17:07.640 --> 0:17:10.719
<v Speaker 4>in Guinea, We had working diagnostics within a matter of

0:17:10.760 --> 0:17:11.840
<v Speaker 4>a week or two from there.

0:17:12.280 --> 0:17:15.480
<v Speaker 1>So what did you learn from that experience that led

0:17:15.520 --> 0:17:20.600
<v Speaker 1>to this kind of next generation surveillance system that you

0:17:20.920 --> 0:17:21.560
<v Speaker 1>are working with.

0:17:22.040 --> 0:17:25.240
<v Speaker 4>So, I mean the idea of Sentinel it is predicated

0:17:25.280 --> 0:17:29.320
<v Speaker 4>on having these different technologies. So there's three kinds, Like

0:17:29.720 --> 0:17:32.680
<v Speaker 4>there are these point of need tests, things that could

0:17:32.680 --> 0:17:36.119
<v Speaker 4>be as sensitive as PC are tests that you know,

0:17:36.160 --> 0:17:39.000
<v Speaker 4>you could run in villages at home that could pick

0:17:39.080 --> 0:17:41.840
<v Speaker 4>up the pathogen everyone's worried about circulating or ones that

0:17:41.920 --> 0:17:45.479
<v Speaker 4>are known to circulate. These other kinds of tests that

0:17:45.560 --> 0:17:47.280
<v Speaker 4>you could do a lot more of, and you could

0:17:47.280 --> 0:17:49.080
<v Speaker 4>test a lot of different pathogens and a lot of

0:17:49.119 --> 0:17:51.680
<v Speaker 4>people and just be like picking up what's making people

0:17:51.680 --> 0:17:53.040
<v Speaker 4>sit coming into the hospitals.

0:17:53.240 --> 0:17:55.679
<v Speaker 1>And as I understand it, some of these tests are

0:17:55.760 --> 0:18:00.000
<v Speaker 1>using using a technology related to crisper to the genie

0:18:00.119 --> 0:18:01.520
<v Speaker 1>editing tool. Tell me about that.

0:18:01.840 --> 0:18:04.600
<v Speaker 4>Sure people know about crisper as the technology to edit

0:18:04.600 --> 0:18:07.439
<v Speaker 4>genes and how it might be changing gene therapy and

0:18:07.600 --> 0:18:10.320
<v Speaker 4>designer babies and all that stuff, But what is crisper.

0:18:10.359 --> 0:18:14.200
<v Speaker 4>It was actually originally discovered in nature as a bacteria's

0:18:14.280 --> 0:18:18.479
<v Speaker 4>immune system to viruses. It was designed in nature to

0:18:18.640 --> 0:18:22.240
<v Speaker 4>detect and to destroy viruses. So that's what it's good at.

0:18:22.400 --> 0:18:26.439
<v Speaker 4>It's good at detecting viruses. And there's certain classes of

0:18:26.560 --> 0:18:29.280
<v Speaker 4>crisper that have properties that make them really good for

0:18:29.440 --> 0:18:33.679
<v Speaker 4>just detection. You could engineer that detection signal to like

0:18:34.200 --> 0:18:37.000
<v Speaker 4>light up when something is found in a sample, and

0:18:37.040 --> 0:18:39.800
<v Speaker 4>that could be used as a diagnostic. So it's very

0:18:39.880 --> 0:18:42.960
<v Speaker 4>very sensitive, very very specific. It makes really good point

0:18:43.000 --> 0:18:45.879
<v Speaker 4>of need tests, and it's also so sensitive specific you

0:18:45.880 --> 0:18:48.520
<v Speaker 4>could combine it in a multiplex test and do a

0:18:48.520 --> 0:18:49.879
<v Speaker 4>lot of testing simultaneously.

0:18:50.960 --> 0:18:55.240
<v Speaker 1>Okay, so those are the point of need tests. And

0:18:55.280 --> 0:18:59.359
<v Speaker 1>then there's this other category, which is the genetic sequencing

0:18:59.400 --> 0:19:02.040
<v Speaker 1>machines that you were able to get into hospitals in

0:19:02.080 --> 0:19:04.720
<v Speaker 1>West Africa. What do those allow you to do.

0:19:04.720 --> 0:19:07.119
<v Speaker 4>In the clinics when people come into the clinics or hospitals.

0:19:07.160 --> 0:19:08.720
<v Speaker 4>You want to be able to test for like a

0:19:08.760 --> 0:19:10.840
<v Speaker 4>patient comes in and you test for twenty things right

0:19:10.880 --> 0:19:12.520
<v Speaker 4>at the same time, because it could be any of

0:19:12.560 --> 0:19:12.880
<v Speaker 4>those things.

0:19:12.920 --> 0:19:14.959
<v Speaker 5>We don't know a lot of times.

0:19:14.560 --> 0:19:17.720
<v Speaker 1>Like in that instance, are you just like what are

0:19:17.760 --> 0:19:21.520
<v Speaker 1>all the pathogens in this person's body right now?

0:19:21.560 --> 0:19:23.280
<v Speaker 5>Is that what you're doing in that Yes, that is

0:19:23.320 --> 0:19:24.000
<v Speaker 5>the goal of it.

0:19:24.080 --> 0:19:26.919
<v Speaker 4>We're not there like we know everything, but we but

0:19:26.960 --> 0:19:27.959
<v Speaker 4>it's getting close to that.

0:19:28.760 --> 0:19:31.120
<v Speaker 1>I mean, that's like the dream right then you can

0:19:31.240 --> 0:19:34.280
<v Speaker 1>just say, like tell me everything that's there, Like that's

0:19:34.320 --> 0:19:35.760
<v Speaker 1>the one that I thought you couldn't do.

0:19:35.880 --> 0:19:36.080
<v Speaker 4>Yeah.

0:19:36.240 --> 0:19:37.840
<v Speaker 1>Yeah, And you're saying you're getting there.

0:19:37.760 --> 0:19:39.280
<v Speaker 5>Well, you were getting there, yeah exactly.

0:19:39.359 --> 0:19:42.480
<v Speaker 4>Right now, It's like expensive and time consuming, but like yes,

0:19:42.560 --> 0:19:44.520
<v Speaker 4>that would be the kind of holy grail, right, And

0:19:44.560 --> 0:19:47.920
<v Speaker 4>so we've been building these like really super exciting tools

0:19:48.160 --> 0:19:51.040
<v Speaker 4>that allow people to really in a very user friendly way,

0:19:51.520 --> 0:19:55.080
<v Speaker 4>see you know what, all the different pathogens that they're detecting,

0:19:55.119 --> 0:19:57.840
<v Speaker 4>where they're occurring, and start to really kind of make

0:19:57.920 --> 0:19:59.560
<v Speaker 4>sense of all of that data.

0:20:00.080 --> 0:20:05.720
<v Speaker 1>And has there been an instance more recently when you

0:20:05.760 --> 0:20:08.679
<v Speaker 1>were able to use this set of tools to you know,

0:20:08.920 --> 0:20:09.760
<v Speaker 1>stam an outbreak?

0:20:10.000 --> 0:20:10.359
<v Speaker 5>Definitely?

0:20:10.440 --> 0:20:12.000
<v Speaker 4>Well, yeah, I mean the funny thing about the kind

0:20:12.040 --> 0:20:14.199
<v Speaker 4>of work we do is like when we're successful, you

0:20:14.240 --> 0:20:17.360
<v Speaker 4>don't know about it, right, yes, right, right, Yeah.

0:20:17.440 --> 0:20:19.720
<v Speaker 1>I don't know all of the pandemics. We didn't, Yeah,

0:20:19.960 --> 0:20:20.800
<v Speaker 1>because of that's it.

0:20:21.200 --> 0:20:24.200
<v Speaker 4>Well, and so we we have lots of great successes.

0:20:24.440 --> 0:20:27.200
<v Speaker 4>The fact that when COVID hit, we had working COVID

0:20:27.240 --> 0:20:31.840
<v Speaker 4>diagnostics in serri Leone, Senegal and Nigeria our main sentinel

0:20:31.880 --> 0:20:35.280
<v Speaker 4>sites before any US hospital, like any that's sort of

0:20:35.280 --> 0:20:36.399
<v Speaker 4>like what you don't hear about.

0:20:37.440 --> 0:20:39.840
<v Speaker 1>So okay, so that's your work on this, you know,

0:20:40.560 --> 0:20:46.000
<v Speaker 1>very small scale, right, genetic screening looking for molecules in patients.

0:20:47.080 --> 0:20:50.119
<v Speaker 1>I want to sort of go up many many orders

0:20:50.119 --> 0:20:53.600
<v Speaker 1>of magnitude here make a big turn and talk about

0:20:53.840 --> 0:20:58.680
<v Speaker 1>your work on thinking about outbreaks at the scale of society,

0:20:58.800 --> 0:21:01.760
<v Speaker 1>at the scale of country in the world. You actually

0:21:01.760 --> 0:21:04.639
<v Speaker 1>co wrote a book about this side of things. It

0:21:04.680 --> 0:21:08.119
<v Speaker 1>came out before the COVID pandemic in twenty eighteen. It

0:21:08.200 --> 0:21:11.160
<v Speaker 1>was called Outbreak Culture. Tell me about that.

0:21:11.320 --> 0:21:17.400
<v Speaker 4>Yeah, So Outbreak Culture was kind of born from conversations

0:21:17.440 --> 0:21:21.119
<v Speaker 4>I had with a journalist, Laras LAHI just kind of

0:21:21.200 --> 0:21:23.240
<v Speaker 4>processing what we were in.

0:21:23.400 --> 0:21:25.280
<v Speaker 5>Like, I think I said that, you know, the bowl

0:21:25.280 --> 0:21:33.720
<v Speaker 5>outbreak was really like a lot. I mean a lot.

0:21:33.760 --> 0:21:33.959
<v Speaker 5>You know.

0:21:34.000 --> 0:21:35.920
<v Speaker 4>Obviously now people know the kind of a lot that

0:21:36.000 --> 0:21:38.080
<v Speaker 4>pandemics can be from COVID, but it was different because

0:21:38.080 --> 0:21:40.359
<v Speaker 4>it was like it was extreme and nobody else seemed

0:21:40.359 --> 0:21:41.919
<v Speaker 4>to know about it, about us, but there was this

0:21:41.960 --> 0:21:44.040
<v Speaker 4>group of people that were like just deep in it,

0:21:44.720 --> 0:21:47.600
<v Speaker 4>and we just saw a societal breakdown, you know. So

0:21:47.880 --> 0:21:52.439
<v Speaker 4>I often say that viruses expose and exploit the cracks

0:21:52.480 --> 0:21:56.240
<v Speaker 4>in our society. They prey upon us and the division

0:21:56.240 --> 0:21:58.480
<v Speaker 4>between us. And at the end of the day, it's

0:21:58.480 --> 0:22:01.359
<v Speaker 4>like outbreaks are crucible, right there is this It's just

0:22:01.400 --> 0:22:04.600
<v Speaker 4>like something that's insidious. It spreads without you knowing that

0:22:04.640 --> 0:22:07.560
<v Speaker 4>weaponizes your neighbor, that suddenly makes your neighbor like a

0:22:07.720 --> 0:22:11.159
<v Speaker 4>dangerous threat. And so it's kind of everything is so

0:22:11.359 --> 0:22:14.840
<v Speaker 4>much going on, you know, and the lockdowns and all

0:22:14.880 --> 0:22:18.520
<v Speaker 4>of it. So it essentially was this realization I was

0:22:18.520 --> 0:22:20.920
<v Speaker 4>trying to like process what was going on and why

0:22:21.080 --> 0:22:26.280
<v Speaker 4>was this so insane? And one of Nathan Yosback, who

0:22:26.400 --> 0:22:29.080
<v Speaker 4>was my team, he had great insights always and he

0:22:29.320 --> 0:22:31.920
<v Speaker 4>basically when he was in first came back to Sierra Leone,

0:22:31.960 --> 0:22:34.360
<v Speaker 4>he had said something like, it's funny thing is nobody

0:22:34.359 --> 0:22:35.679
<v Speaker 4>seems to even care about the virus.

0:22:35.720 --> 0:22:39.359
<v Speaker 5>The virus is like the backdrop, you know, it's what

0:22:39.440 --> 0:22:42.280
<v Speaker 5>does that mean? It's so proper between people.

0:22:42.280 --> 0:22:44.560
<v Speaker 4>It's a political battle, you know, and the virus is

0:22:44.600 --> 0:22:47.320
<v Speaker 4>the thing around it, but it's actually about who's in charge.

0:22:47.560 --> 0:22:47.800
<v Speaker 4>You know.

0:22:48.600 --> 0:22:53.560
<v Speaker 5>There's so much politics, and I think ultimately the most that.

0:22:53.600 --> 0:22:57.200
<v Speaker 1>Is wild foreshadowing, right, And like, yeah, I mean you

0:22:57.400 --> 0:22:59.280
<v Speaker 1>you wrote about this and the book came out in

0:22:59.320 --> 0:23:03.280
<v Speaker 1>what twenty eighteen or something, and like when you talk

0:23:03.320 --> 0:23:06.120
<v Speaker 1>about that, when you say, what everybody starts talking about

0:23:06.160 --> 0:23:10.440
<v Speaker 1>is politics, like that's like, you know, chills down my spine.

0:23:10.600 --> 0:23:13.560
<v Speaker 4>Yeah, right, I had a lot of people who were like,

0:23:13.640 --> 0:23:15.639
<v Speaker 4>thank goodness you wrote this book, because then I just

0:23:15.840 --> 0:23:17.200
<v Speaker 4>knew what was happening during COVID.

0:23:18.040 --> 0:23:21.280
<v Speaker 1>There's a really deep human nature thing that happens, right.

0:23:21.320 --> 0:23:23.639
<v Speaker 1>I mean, that's the interesting piece of the book. In

0:23:23.680 --> 0:23:26.960
<v Speaker 1>a certain way. It's like it's not because some particular

0:23:27.080 --> 0:23:31.399
<v Speaker 1>politician is craven or something right as you describe it.

0:23:31.400 --> 0:23:33.800
<v Speaker 1>It's just like, this fundamental thing that.

0:23:33.720 --> 0:23:36.600
<v Speaker 4>Happened doesn't have to happen by the way. It doesn't.

0:23:37.200 --> 0:23:39.080
<v Speaker 4>I thought out the places where people were doing it

0:23:39.119 --> 0:23:41.080
<v Speaker 4>the right way. Early in the outbreak. I was like

0:23:41.119 --> 0:23:43.520
<v Speaker 4>advising everybody in their mother and you know, kind of

0:23:43.560 --> 0:23:46.560
<v Speaker 4>just around talking to people, and I stumbled upon this

0:23:46.680 --> 0:23:50.520
<v Speaker 4>like really just interesting place at Colorado Mesa University in

0:23:50.560 --> 0:23:51.680
<v Speaker 4>Grand Junction, Colorado.

0:23:52.119 --> 0:23:53.600
<v Speaker 5>They had, you know, a.

0:23:53.560 --> 0:23:59.159
<v Speaker 4>Community that was very diverse politically, ideologically, ethnically, and they

0:23:59.160 --> 0:24:01.399
<v Speaker 4>were trying to figure out how to work through it.

0:24:01.880 --> 0:24:04.440
<v Speaker 4>And they didn't have money. They couldn't just throw money

0:24:04.480 --> 0:24:06.280
<v Speaker 4>the problem and test everybody, so they had to figure

0:24:06.280 --> 0:24:08.200
<v Speaker 4>out how to be creative. And that's where we brought

0:24:08.240 --> 0:24:10.639
<v Speaker 4>our data analytics system to them, and we brought some

0:24:10.720 --> 0:24:13.760
<v Speaker 4>of our support to help them be like smart about it.

0:24:14.080 --> 0:24:16.200
<v Speaker 4>And the things that they did that were different from

0:24:16.359 --> 0:24:19.359
<v Speaker 4>all the other places in the United States was they

0:24:19.680 --> 0:24:23.639
<v Speaker 4>tested smartly. They supported testing in the community, not just

0:24:23.840 --> 0:24:26.760
<v Speaker 4>like testing themselves. I would always basically liken it to

0:24:27.320 --> 0:24:30.360
<v Speaker 4>being in a place where there's wildfires and a shortage

0:24:30.359 --> 0:24:32.080
<v Speaker 4>of fire alarms, and you went and you bought like

0:24:32.119 --> 0:24:34.240
<v Speaker 4>a thousand of them and putting them in your own

0:24:34.280 --> 0:24:37.280
<v Speaker 4>home and nobody around you has one, Like you will

0:24:37.280 --> 0:24:39.120
<v Speaker 4>pick up a fire when it gets to your house,

0:24:39.160 --> 0:24:41.600
<v Speaker 4>but at that point it's burning to the ground. Wouldn't

0:24:41.600 --> 0:24:43.400
<v Speaker 4>it be smarter to set up, you know, put fire

0:24:43.400 --> 0:24:45.920
<v Speaker 4>alarms in every one of your neighbor's homes so when

0:24:45.960 --> 0:24:48.119
<v Speaker 4>they get it, you get the signal. Right, And that's

0:24:48.160 --> 0:24:52.119
<v Speaker 4>basically what we proved in using like an epidemiological model

0:24:52.400 --> 0:24:56.480
<v Speaker 4>that yes, actually even randomly testing your neighbors will be

0:24:56.480 --> 0:24:59.240
<v Speaker 4>better than testing yourself. That's like one example, right, And

0:24:59.280 --> 0:25:01.879
<v Speaker 4>they were thinking that way. We were being creative and

0:25:01.920 --> 0:25:04.920
<v Speaker 4>we weren't just in this like isolated box of protect myself,

0:25:04.960 --> 0:25:05.680
<v Speaker 4>protect myself.

0:25:06.760 --> 0:25:10.000
<v Speaker 1>So we are at this place now where the whole

0:25:10.080 --> 0:25:17.240
<v Speaker 1>idea of pandemics and epidemiology is is weirdly politicized, and

0:25:17.359 --> 0:25:22.000
<v Speaker 1>it seems like we would be screwed essentially socially politically

0:25:22.080 --> 0:25:24.919
<v Speaker 1>if there were to be another outbreak. What do we

0:25:24.960 --> 0:25:25.640
<v Speaker 1>do about that?

0:25:26.080 --> 0:25:28.160
<v Speaker 4>I think that we need to be way less toxic

0:25:28.200 --> 0:25:29.359
<v Speaker 4>in the way we talk about it. You know, we

0:25:29.440 --> 0:25:32.560
<v Speaker 4>have to basically decharge how we think about these things together,

0:25:32.960 --> 0:25:35.800
<v Speaker 4>and we have to use every like mini event as

0:25:35.840 --> 0:25:40.600
<v Speaker 4>an opportunity of like building better systems. When RSV is

0:25:40.640 --> 0:25:43.600
<v Speaker 4>going through the schools, we can help parents think about

0:25:43.680 --> 0:25:46.800
<v Speaker 4>basically just really think about what are the parents' incentives, right,

0:25:47.240 --> 0:25:50.040
<v Speaker 4>Parents who don't want their kids vaccinated, they're just scared parents.

0:25:50.160 --> 0:25:50.800
<v Speaker 5>At the end of the day.

0:25:50.840 --> 0:25:52.239
<v Speaker 4>We need to tell them about how to keep their

0:25:52.320 --> 0:25:55.280
<v Speaker 4>kids safe. And that's what's important, you know. And we

0:25:55.280 --> 0:25:59.120
<v Speaker 4>should be showing value at every point and respecting autonomy

0:25:59.440 --> 0:26:02.520
<v Speaker 4>where we can and trying to you know, support that conversations.

0:26:03.800 --> 0:26:05.879
<v Speaker 1>Is there anything we didn't talk about, anything else you

0:26:05.880 --> 0:26:06.639
<v Speaker 1>want to talk about?

0:26:06.880 --> 0:26:08.399
<v Speaker 4>I guess the thing I just don't express to you

0:26:08.560 --> 0:26:11.920
<v Speaker 4>is the joy that we have in Sentinel. You know,

0:26:12.040 --> 0:26:14.080
<v Speaker 4>when I think about Sentinel, why it matters to me,

0:26:14.320 --> 0:26:17.680
<v Speaker 4>right is as somebody who's a nerd at the heart,

0:26:17.800 --> 0:26:20.560
<v Speaker 4>you know, I love math, and I love computer science,

0:26:20.600 --> 0:26:23.119
<v Speaker 4>and I love building things, and I love it. But

0:26:23.160 --> 0:26:25.600
<v Speaker 4>I also just want to say it's joyous and the

0:26:25.720 --> 0:26:28.440
<v Speaker 4>joy that is important responding to outbreaks, Like you will

0:26:28.480 --> 0:26:31.000
<v Speaker 4>not respond to an outbreak by walking around with your

0:26:31.000 --> 0:26:33.240
<v Speaker 4>head down. You're going to respond to this kind of

0:26:33.280 --> 0:26:36.800
<v Speaker 4>existential threat by pure joy. And so I love our

0:26:36.840 --> 0:26:39.680
<v Speaker 4>training programs because they are fire. The students are that

0:26:39.840 --> 0:26:42.119
<v Speaker 4>we like, you know, would go canoeing on the Charles

0:26:42.200 --> 0:26:44.800
<v Speaker 4>River altogether, Like we're creating a network of people who

0:26:44.800 --> 0:26:47.440
<v Speaker 4>are friends with each other. So to me, I think

0:26:47.440 --> 0:26:50.240
<v Speaker 4>that's like the most powerful part. And what I'm really

0:26:50.240 --> 0:26:52.280
<v Speaker 4>proud of is that we're bringing the best technology, but

0:26:52.320 --> 0:26:56.280
<v Speaker 4>we're bringing it with like extreme joy and communication and friendship.

0:26:56.760 --> 0:26:59.520
<v Speaker 4>That's how we will overcome the next pandemic, you know,

0:26:59.760 --> 0:27:00.720
<v Speaker 4>by doing it together.

0:27:05.000 --> 0:27:06.840
<v Speaker 1>Thank you for your time. It was great to talk

0:27:06.880 --> 0:27:10.520
<v Speaker 1>with you, Kate, to talk with you too. Partis Sabetti

0:27:10.680 --> 0:27:13.760
<v Speaker 1>is a professor in the Department of Immunology and Infectious

0:27:13.800 --> 0:27:17.040
<v Speaker 1>Disease at the Harvard School of Public Health. She is

0:27:17.080 --> 0:27:20.920
<v Speaker 1>also an Institute member at the Broad Institute of MIT

0:27:21.160 --> 0:27:24.760
<v Speaker 1>and Harvard. Thanks to both my guests today, Christian, Happy

0:27:24.840 --> 0:27:29.640
<v Speaker 1>and partis Sabbetti. Next week on the show, Epstein Barr

0:27:29.960 --> 0:27:32.760
<v Speaker 1>the first cell for Christ's say Somebody's on his side,

0:27:32.760 --> 0:27:36.880
<v Speaker 1>I'll tell You. Incubation is a co production of Pushkin

0:27:36.960 --> 0:27:40.920
<v Speaker 1>Industries and Ruby Studio at iHeartMedia. It's produced by Kate

0:27:41.000 --> 0:27:44.720
<v Speaker 1>Ferby and Brittany Croman. The show is edited by Lacey Roberts.

0:27:44.880 --> 0:27:48.680
<v Speaker 1>It's mastered by Sarah Bruguerer, fact checking by Joseph Friedman.

0:27:49.200 --> 0:27:52.640
<v Speaker 1>Our executive producers are Lacey Roberts and Matt Romano. I'm

0:27:52.720 --> 0:27:53.520
<v Speaker 1>Jacob Goldstein.

0:27:53.680 --> 0:28:05.159
<v Speaker 3>Thanks for listening.