1 00:00:05,800 --> 00:00:10,440 Speaker 1: Nobody likes getting colonized by microbial invaders, Those little guys 2 00:00:10,480 --> 00:00:13,560 Speaker 1: swimming around inside you, messing up your body's normal function, 3 00:00:13,760 --> 00:00:17,840 Speaker 1: hijacking yourselves to make more themselves, meanwhile giving you headaches 4 00:00:17,960 --> 00:00:20,639 Speaker 1: or sniffles or stomach pains or even worse. No, we 5 00:00:20,680 --> 00:00:23,279 Speaker 1: want them out. We take medicine to kill them, or 6 00:00:23,320 --> 00:00:25,720 Speaker 1: we wait for our immune system to hunt them down 7 00:00:25,800 --> 00:00:29,720 Speaker 1: and root them out, leaving us with pure, unpolluted human bits. 8 00:00:30,120 --> 00:00:30,320 Speaker 2: Right. 9 00:00:30,800 --> 00:00:34,680 Speaker 1: Not really, Actually, the truth about our relationship with microbes 10 00:00:34,760 --> 00:00:38,200 Speaker 1: is much more complex. They not only fight on our side. 11 00:00:38,240 --> 00:00:40,920 Speaker 1: Sometimes most of the time we can't even tell who 12 00:00:41,040 --> 00:00:43,960 Speaker 1: is on which side, or if there are even sides. 13 00:00:44,200 --> 00:00:46,920 Speaker 1: Maybe it's more like a big microbial economy than a 14 00:00:46,920 --> 00:00:49,600 Speaker 1: black and white battle. Today in the podcast, we're gonna 15 00:00:49,600 --> 00:00:51,839 Speaker 1: dig into the life of microbes and the role they 16 00:00:51,880 --> 00:00:54,880 Speaker 1: play in keeping us healthy and sick. Do they help us, 17 00:00:54,960 --> 00:00:57,520 Speaker 1: do they hurt us? Or is the answer? As always, 18 00:00:57,760 --> 00:01:01,160 Speaker 1: it depends a word to today's parents. Today's episode is 19 00:01:01,200 --> 00:01:04,120 Speaker 1: getting a little gooey. We can't talk about microbes without 20 00:01:04,120 --> 00:01:07,399 Speaker 1: talking about pooh. It's always a conversational risk when talking 21 00:01:07,440 --> 00:01:10,160 Speaker 1: to biologists, so keep that in mind if you're playing 22 00:01:10,160 --> 00:01:13,319 Speaker 1: this episode with your little ones. I vote let them listen. 23 00:01:13,560 --> 00:01:17,320 Speaker 1: There's pooer in knowledge. See what I did there? Either way, 24 00:01:17,760 --> 00:01:21,759 Speaker 1: Welcome to Daniel and Kelly's extraordinary microbial universe. 25 00:01:35,880 --> 00:01:39,160 Speaker 3: Hello. I'm kellyleener Smith. I study parasites in space, and 26 00:01:39,160 --> 00:01:42,280 Speaker 3: today we are talking about one of my favorite topics 27 00:01:42,400 --> 00:01:45,720 Speaker 3: as a biologist, which is to say, microbes and poop. 28 00:01:46,319 --> 00:01:48,960 Speaker 1: Hi. I'm Daniel. I'm a particle physicist, and I have 29 00:01:49,080 --> 00:01:50,200 Speaker 1: poop in my freezer. 30 00:01:50,600 --> 00:01:53,640 Speaker 3: Oh oh, that's a little too much, all right? So 31 00:01:53,680 --> 00:01:57,480 Speaker 3: what is the most unpleasant microbe related thing that's ever 32 00:01:57,520 --> 00:02:00,080 Speaker 3: happened to you? 33 00:02:00,080 --> 00:02:03,920 Speaker 1: You want to hear about every time I had diarrhea? 34 00:02:03,960 --> 00:02:06,200 Speaker 3: Maybe the one worst time is what I was thinking. 35 00:02:06,320 --> 00:02:08,320 Speaker 1: I guess maybe not to hear about that. 36 00:02:08,760 --> 00:02:10,600 Speaker 3: Never mind, I'm backing off. For me, it was an 37 00:02:10,600 --> 00:02:13,400 Speaker 3: infection that was a healing and that was unpleasant. We 38 00:02:13,440 --> 00:02:16,079 Speaker 3: should go in a different direction. What else should I ask? 39 00:02:16,800 --> 00:02:19,480 Speaker 3: Here's my question for you? What is your favorite thing 40 00:02:19,600 --> 00:02:24,160 Speaker 3: to consume that increases the diversity of your microbiome however 41 00:02:24,200 --> 00:02:25,320 Speaker 3: temporarily well. 42 00:02:25,360 --> 00:02:28,040 Speaker 1: As you'll hear in our conversation with Katrina in a minute, 43 00:02:28,120 --> 00:02:30,799 Speaker 1: we are big fans of beans, in the whites and household. 44 00:02:30,840 --> 00:02:34,000 Speaker 1: And so we're even members of the Rancho Gordo Bean Club, 45 00:02:34,280 --> 00:02:37,280 Speaker 1: which means we have mailed to us every few weeks 46 00:02:37,320 --> 00:02:40,079 Speaker 1: a box of heirloom beans, and so we have all 47 00:02:40,120 --> 00:02:42,519 Speaker 1: sorts of crazy beans and basically we have beans at 48 00:02:42,560 --> 00:02:43,200 Speaker 1: every meal. 49 00:02:43,760 --> 00:02:46,520 Speaker 3: Wow. So you must have like the best bean recipes? 50 00:02:46,520 --> 00:02:47,400 Speaker 3: Can you send them to me? 51 00:02:48,240 --> 00:02:49,840 Speaker 1: Absolutely? Yeah, we'll share some with. 52 00:02:49,800 --> 00:02:52,200 Speaker 3: You because I got to say, after this conversation with Katrina, 53 00:02:52,280 --> 00:02:54,160 Speaker 3: I am starting to think about how beans can be 54 00:02:54,160 --> 00:02:56,280 Speaker 3: incorporated into every one of our dinners. 55 00:02:56,280 --> 00:02:59,480 Speaker 1: At least we put lentils on everything. They're in salad 56 00:03:00,080 --> 00:03:02,720 Speaker 1: and everything. They're fantastic. Yeah, we're big fans of beans. 57 00:03:02,720 --> 00:03:05,080 Speaker 1: And our son loves beans too, which is a great outcome. 58 00:03:05,480 --> 00:03:07,639 Speaker 3: You didn't mention your daughter. Does she not love beans? 59 00:03:07,760 --> 00:03:10,240 Speaker 1: She's not yet on the bean wagon. Yep. 60 00:03:10,840 --> 00:03:12,840 Speaker 3: You know it's hard to get kids on the bean wagon, 61 00:03:12,960 --> 00:03:14,400 Speaker 3: I imagine. Yeah. 62 00:03:14,440 --> 00:03:16,000 Speaker 1: Well, you know, with lots of foods, you can start 63 00:03:16,000 --> 00:03:18,760 Speaker 1: with like the easier version, you know, like if you're 64 00:03:18,760 --> 00:03:21,280 Speaker 1: gonna start drinking coffee, you put milk and sugar in it. 65 00:03:21,520 --> 00:03:24,320 Speaker 1: I'm not quite sure what the easy way is with beans. 66 00:03:24,360 --> 00:03:26,800 Speaker 1: Maybe put lots of cheese on top or something. 67 00:03:27,120 --> 00:03:29,600 Speaker 3: At tacos has got to be tacos tacos. 68 00:03:29,200 --> 00:03:33,280 Speaker 1: Yeah, exactly. Anyway, today we are talking about really fun 69 00:03:33,280 --> 00:03:36,880 Speaker 1: and really important topics, what's going on inside our bodies 70 00:03:36,880 --> 00:03:39,400 Speaker 1: and on our skin, about all those critters that are 71 00:03:39,400 --> 00:03:42,120 Speaker 1: living with us or who are part of us. 72 00:03:42,280 --> 00:03:44,640 Speaker 3: And you asked our listeners a question to gauge how 73 00:03:44,680 --> 00:03:48,120 Speaker 3: subtly they understand the importance of bacteria in our bodies. 74 00:03:48,200 --> 00:03:51,480 Speaker 3: So you ask them, do microbes hurt you or keep 75 00:03:51,520 --> 00:03:53,880 Speaker 3: you healthy? And here's what they had to say. 76 00:03:54,400 --> 00:03:57,200 Speaker 4: Microbes in your body are what allow you to function 77 00:03:57,280 --> 00:04:02,440 Speaker 4: at all, So yeah, they're helpful, although some kinds of 78 00:04:02,480 --> 00:04:06,840 Speaker 4: microbes are bad for you and they will hurt you both. 79 00:04:07,120 --> 00:04:10,200 Speaker 5: There are good microbes and bad microbes. 80 00:04:10,400 --> 00:04:13,840 Speaker 6: Providing the microbes in your body are kept under control 81 00:04:13,920 --> 00:04:17,080 Speaker 6: in their number and their type, they can definitely help you. 82 00:04:17,279 --> 00:04:21,600 Speaker 6: But if you get introduced microbes or the microbes get 83 00:04:21,720 --> 00:04:24,279 Speaker 6: to a critical number, then they can also cause harm. 84 00:04:25,040 --> 00:04:28,840 Speaker 5: Like most questions in biology, the answer is it depends. 85 00:04:29,480 --> 00:04:33,839 Speaker 5: For example, your digestive system doesn't work without microbes, but 86 00:04:33,920 --> 00:04:37,080 Speaker 5: if you have too many of the wrong ones, then 87 00:04:37,400 --> 00:04:39,080 Speaker 5: it doesn't work at all, we. 88 00:04:39,040 --> 00:04:41,120 Speaker 7: Couldn't live with the microbes in their body. 89 00:04:41,720 --> 00:04:46,120 Speaker 8: I'm onto you now with your deliberately vague questions. So 90 00:04:46,880 --> 00:04:50,279 Speaker 8: microbes in the body, I think what you wanted me 91 00:04:50,440 --> 00:04:55,960 Speaker 8: to say was in the body, but not in the bloodstream. However, 92 00:04:56,200 --> 00:04:59,440 Speaker 8: I think the research has changed on that, so I 93 00:04:59,480 --> 00:05:02,599 Speaker 8: actually think you do have microbes in the bloodstream now, 94 00:05:03,120 --> 00:05:05,600 Speaker 8: but by notche Yeah, they are good for you. 95 00:05:06,200 --> 00:05:10,719 Speaker 2: I read somewhere that our bodies are whole ecosystems, so 96 00:05:10,800 --> 00:05:14,880 Speaker 2: I would say that on the whole, the microbes are 97 00:05:15,000 --> 00:05:17,800 Speaker 2: beneficial to us. Hope they do both. 98 00:05:17,839 --> 00:05:19,800 Speaker 7: They help you and they can hurt you if they 99 00:05:19,839 --> 00:05:21,479 Speaker 7: metestasize turn to cancer. 100 00:05:21,800 --> 00:05:26,800 Speaker 9: Microbes in our body are good and help, but there 101 00:05:26,880 --> 00:05:29,640 Speaker 9: might also be bad microbes that you could get that 102 00:05:29,680 --> 00:05:30,720 Speaker 9: would make you sick. 103 00:05:31,680 --> 00:05:36,240 Speaker 1: They can help or hurt or neither, or either one, 104 00:05:36,279 --> 00:05:37,719 Speaker 1: depending on where it happens to be. 105 00:05:38,440 --> 00:05:40,440 Speaker 10: I think the general rule of thumb is that the 106 00:05:40,480 --> 00:05:43,640 Speaker 10: microbes that are in your body are there to help you, 107 00:05:43,720 --> 00:05:46,120 Speaker 10: whereas the microbes that are trying to get into your 108 00:05:46,120 --> 00:05:49,039 Speaker 10: body from the outside are the ones you gotta worry about. 109 00:05:49,600 --> 00:05:53,159 Speaker 2: I believe the great majority of them are benign and 110 00:05:53,320 --> 00:05:58,880 Speaker 2: useful microbes compared to the rare and wanted to intruders. 111 00:05:59,360 --> 00:06:00,960 Speaker 1: Help, absolutely help. 112 00:06:01,360 --> 00:06:04,600 Speaker 7: I can barely distinguish myself from my microbes. 113 00:06:05,440 --> 00:06:08,039 Speaker 9: Finally, a question I can actually answer as a nurse. 114 00:06:08,880 --> 00:06:12,760 Speaker 9: Microbes in the body can be harmful or beneficial. It 115 00:06:12,880 --> 00:06:16,719 Speaker 9: depends on the type of microbe, the quantity of that microbe, 116 00:06:16,800 --> 00:06:19,400 Speaker 9: and the location of that microbe. 117 00:06:19,120 --> 00:06:22,800 Speaker 7: Both because some are bad for your body, like germs, 118 00:06:23,080 --> 00:06:25,440 Speaker 7: and some are good for your body like good backter. 119 00:06:25,680 --> 00:06:31,560 Speaker 11: Yet, there are forty trillion microbes in your body compared 120 00:06:31,640 --> 00:06:35,640 Speaker 11: to thirty eight trillion human body cells in your body, 121 00:06:36,240 --> 00:06:40,200 Speaker 11: and the majority of the microbes are there to make 122 00:06:40,279 --> 00:06:41,239 Speaker 11: you feel better. 123 00:06:41,880 --> 00:06:43,480 Speaker 1: And then every once in a while on the balance 124 00:06:43,560 --> 00:06:47,479 Speaker 1: is out of whack. They get into stuff they're not 125 00:06:47,560 --> 00:06:50,160 Speaker 1: supposed to do and cause us a little bit of damage. 126 00:06:50,200 --> 00:06:51,840 Speaker 1: But hey, what areferens for? 127 00:06:52,760 --> 00:06:56,960 Speaker 10: Microbes span the gamut from being critical for functioning to 128 00:06:57,080 --> 00:06:57,720 Speaker 10: being lethal. 129 00:06:58,360 --> 00:07:01,960 Speaker 12: We might not exist without micro It's something like ten 130 00:07:02,000 --> 00:07:06,240 Speaker 12: times more microbes than human sells in the body. They 131 00:07:06,279 --> 00:07:11,240 Speaker 12: help with digestion and glucose metabolism, help absorb nutrients in 132 00:07:11,280 --> 00:07:11,760 Speaker 12: the body. 133 00:07:12,520 --> 00:07:15,880 Speaker 7: Classic science answer it depends, Oh, this. 134 00:07:15,960 --> 00:07:20,480 Speaker 9: Is a false dichotomy microbes both hurt and help you. 135 00:07:20,920 --> 00:07:23,800 Speaker 5: I think microbes in our body are the part of 136 00:07:23,880 --> 00:07:24,560 Speaker 5: our body. 137 00:07:24,920 --> 00:07:26,640 Speaker 1: These are great answers. Thank you very much to our 138 00:07:26,680 --> 00:07:29,400 Speaker 1: list of volunteers, and remember you can join them at 139 00:07:29,440 --> 00:07:32,600 Speaker 1: any time. Just write to us two questions at Danielandkelly 140 00:07:32,680 --> 00:07:36,080 Speaker 1: dot org and we will hit you up next time. Kelly, 141 00:07:36,120 --> 00:07:37,360 Speaker 1: what did you think of these answers? 142 00:07:37,600 --> 00:07:40,360 Speaker 3: I liked I can barely distinguish myself from my microbes. 143 00:07:40,400 --> 00:07:43,120 Speaker 3: That made me smile. I wanted to learn more about 144 00:07:43,160 --> 00:07:46,200 Speaker 3: the cancer and bacteria link. I don't know too much 145 00:07:46,240 --> 00:07:48,920 Speaker 3: about that. Yeah, what about you? What was your favorite answer? 146 00:07:49,120 --> 00:07:51,000 Speaker 1: I like the person who said that they're onto us 147 00:07:51,000 --> 00:07:55,760 Speaker 1: with our deliberately vague questions. This whole thing is some 148 00:07:55,880 --> 00:07:58,680 Speaker 1: kind of scheme. Yeah. I thought these were great, and 149 00:07:58,720 --> 00:08:01,360 Speaker 1: they show that people have, all right, a pretty nuanced 150 00:08:01,480 --> 00:08:04,800 Speaker 1: understanding of microbes. They're not just pathogens. They're part of 151 00:08:04,840 --> 00:08:07,400 Speaker 1: who we are and how we live and all of 152 00:08:07,480 --> 00:08:08,120 Speaker 1: our futures. 153 00:08:08,320 --> 00:08:09,880 Speaker 3: All right, Well, I think it's time for us to 154 00:08:10,000 --> 00:08:13,000 Speaker 3: dig in with the interview with our special guest today. 155 00:08:15,080 --> 00:08:17,600 Speaker 1: So it's my pleasure to welcome back to the podcast, 156 00:08:17,720 --> 00:08:20,720 Speaker 1: Katrina Whitson. She's the senior editor of the whites and 157 00:08:20,800 --> 00:08:24,680 Speaker 1: Science Report quarterly journal, and she's the current holder of 158 00:08:24,720 --> 00:08:27,680 Speaker 1: the whites In and Down Fellowship for actual experimental science, 159 00:08:27,760 --> 00:08:30,960 Speaker 1: not just computer stuff. WHOA welcome to the pod. 160 00:08:31,160 --> 00:08:34,160 Speaker 7: I don't think you guys understand what a big concession 161 00:08:34,200 --> 00:08:37,240 Speaker 7: that was. There have been times at U see Irvine 162 00:08:37,240 --> 00:08:41,280 Speaker 7: where there were three whites and labs. There was Daniel Whitson, 163 00:08:41,320 --> 00:08:44,000 Speaker 7: who you all know and love, shimone Whiteson, his brother 164 00:08:44,080 --> 00:08:46,480 Speaker 7: who is a computer science professor at Oxford but came 165 00:08:46,520 --> 00:08:49,360 Speaker 7: into a sabbatical here. And then there was the actual 166 00:08:49,480 --> 00:08:52,560 Speaker 7: whites Inn Lab Katrina Whitson, where there's like a physical 167 00:08:52,640 --> 00:08:55,400 Speaker 7: lab and there's people in there growing microbes and glasswere 168 00:08:55,440 --> 00:08:58,280 Speaker 7: being autoclaimed and stuff like that. It wasn't just like 169 00:08:58,360 --> 00:08:59,360 Speaker 7: in the cloud. You know. 170 00:09:01,600 --> 00:09:04,200 Speaker 1: Well went out here today to debate the philosophical question 171 00:09:04,360 --> 00:09:06,840 Speaker 1: of whether stuff on the computer is actual answer or not. 172 00:09:06,960 --> 00:09:08,400 Speaker 1: That's just me trying to butter you up. 173 00:09:08,280 --> 00:09:09,840 Speaker 3: From the episode. I think we should bring you back 174 00:09:09,840 --> 00:09:10,440 Speaker 3: for that debate. 175 00:09:10,440 --> 00:09:15,000 Speaker 7: Though I know that what Daniel does is real science. 176 00:09:15,080 --> 00:09:17,640 Speaker 7: I don't mean that. I'm just I'm just enjoying the. 177 00:09:17,720 --> 00:09:18,240 Speaker 2: Joke, you know. 178 00:09:19,080 --> 00:09:20,840 Speaker 1: I'm just glad to get that on the air. Wow, 179 00:09:20,880 --> 00:09:25,880 Speaker 1: we have that requestion. So today we've invited you on 180 00:09:25,920 --> 00:09:28,679 Speaker 1: the podcast because we're talking about microbes and microbes in 181 00:09:28,720 --> 00:09:30,720 Speaker 1: the body and whether they help you when they hurt you, 182 00:09:30,840 --> 00:09:33,560 Speaker 1: what their role is? Are they part of us? Are 183 00:09:33,600 --> 00:09:35,600 Speaker 1: they our friend? Are their enemy? Are they our front 184 00:09:35,640 --> 00:09:38,160 Speaker 1: of me? How does it all work? And this is 185 00:09:38,200 --> 00:09:40,880 Speaker 1: your area of expertise that we're very happy to talk 186 00:09:40,880 --> 00:09:43,679 Speaker 1: to you about it, But first let's get people acquainted 187 00:09:43,720 --> 00:09:45,560 Speaker 1: and make sure everybody is talking about the same thing. 188 00:09:45,640 --> 00:09:47,920 Speaker 1: Like when I say microbe, what does that mean to you? 189 00:09:48,480 --> 00:09:52,280 Speaker 7: Well, microbes refer to life forms that are too small 190 00:09:52,320 --> 00:09:54,920 Speaker 7: to see with the naked eye, but it can refer 191 00:09:55,000 --> 00:09:57,920 Speaker 7: to like lots of different branches of the tree of life. 192 00:09:57,960 --> 00:10:01,520 Speaker 7: So microbes can be viral, which we even debate whether 193 00:10:01,520 --> 00:10:03,920 Speaker 7: they're alive or not. But they're definitely the most biologically 194 00:10:03,960 --> 00:10:09,760 Speaker 7: diverse entity on the planet. So viruses, bacteria, fungi like yeast, 195 00:10:10,120 --> 00:10:16,040 Speaker 7: other eukaryotic parasites like nightmarish ones that cause diarrhea. But 196 00:10:16,200 --> 00:10:18,800 Speaker 7: most microbes are not pathogens. Even though most of what 197 00:10:18,880 --> 00:10:22,880 Speaker 7: you hear about microbes are pathogens, most microbes actually are 198 00:10:23,400 --> 00:10:26,400 Speaker 7: living their lives. Their goal is never to cause disease. 199 00:10:26,440 --> 00:10:27,360 Speaker 7: They're out for themselves. 200 00:10:27,440 --> 00:10:30,440 Speaker 1: You know, they have goals. You mean, like if you 201 00:10:30,480 --> 00:10:32,120 Speaker 1: talk to them, they'd have like hopes and dreams. 202 00:10:32,480 --> 00:10:34,480 Speaker 7: Well, I mean, I think all life forms have a 203 00:10:34,520 --> 00:10:38,679 Speaker 7: basic goal of reproduction, whether they're like thinking about it 204 00:10:38,760 --> 00:10:39,000 Speaker 7: or not. 205 00:10:39,240 --> 00:10:41,120 Speaker 3: Could you give us a bit of our history on 206 00:10:41,160 --> 00:10:43,400 Speaker 3: the thinking about this, Like, did we always think it 207 00:10:43,440 --> 00:10:45,640 Speaker 3: was bad to have microbes in our gut? Have we 208 00:10:45,720 --> 00:10:47,560 Speaker 3: kind of gone back and forth on thinking they're good 209 00:10:47,640 --> 00:10:48,079 Speaker 3: or bad? 210 00:10:48,679 --> 00:10:51,800 Speaker 7: Yeah, I mean definitely. Well, the first time we ever 211 00:10:51,800 --> 00:10:56,959 Speaker 7: even saw microbe was when Van Lohenhook ground his own microscopes. 212 00:10:57,559 --> 00:11:00,560 Speaker 7: He was a draper in the Netherlands, and he was 213 00:11:00,559 --> 00:11:02,760 Speaker 7: grinding his own microscopes in order to look at the 214 00:11:02,840 --> 00:11:04,960 Speaker 7: threads at the edge of the curtains he was making. 215 00:11:05,080 --> 00:11:07,200 Speaker 7: But then for fun, he just took a piece of 216 00:11:07,280 --> 00:11:09,560 Speaker 7: dental plaque, like a glop out of his mouth and 217 00:11:09,640 --> 00:11:12,280 Speaker 7: looked at it, and he saw the little microbes jumping around, 218 00:11:12,360 --> 00:11:14,920 Speaker 7: and he drew pictures of them. He called them animal tules. 219 00:11:15,160 --> 00:11:17,120 Speaker 7: That's the first time we saw microbe. At that point, 220 00:11:17,120 --> 00:11:19,000 Speaker 7: I think our thinking was pretty neutral. I mean, it 221 00:11:19,000 --> 00:11:22,240 Speaker 7: took us a couple centuries to even realize that like 222 00:11:22,440 --> 00:11:26,120 Speaker 7: washing hands was a good idea to prevent disease. So yeah, 223 00:11:26,160 --> 00:11:28,320 Speaker 7: it was pretty neutral for a while. But then I'd 224 00:11:28,320 --> 00:11:31,960 Speaker 7: say by the twentieth century, once cock postulates and we 225 00:11:32,080 --> 00:11:35,480 Speaker 7: understood that microbes caused disease, then I think we were 226 00:11:35,520 --> 00:11:37,920 Speaker 7: just expecting every time we turned a corner and discovered 227 00:11:37,920 --> 00:11:40,640 Speaker 7: a new microbe that it was causing disease. And you 228 00:11:40,720 --> 00:11:42,400 Speaker 7: might have heard of like bubble boy or in the 229 00:11:42,480 --> 00:11:47,160 Speaker 7: nineteen fifties when we first developed notobiotic cultivation, we at 230 00:11:47,200 --> 00:11:48,960 Speaker 7: that time thought like, wouldn't it be great if we 231 00:11:49,000 --> 00:11:51,880 Speaker 7: could all be sterile. We really didn't imagine that the 232 00:11:51,920 --> 00:11:55,640 Speaker 7: microbes were doing too much positive with a few exceptions, 233 00:11:55,720 --> 00:11:58,800 Speaker 7: like there were people who appreciated probiotics around the year 234 00:11:58,880 --> 00:12:00,600 Speaker 7: nineteen hundred, we. 235 00:12:00,559 --> 00:12:03,160 Speaker 1: Go back, I want to understand what is nodobiotics and 236 00:12:03,240 --> 00:12:05,000 Speaker 1: who's the bubble boy great. 237 00:12:05,400 --> 00:12:11,960 Speaker 7: Noobiotics refers to cultivating animals in an intentional community of microbes. 238 00:12:12,000 --> 00:12:14,199 Speaker 7: It doesn't actually have to mean sterile. It can often 239 00:12:14,240 --> 00:12:18,240 Speaker 7: mean like intentionally cultivating say a mouse with like ten 240 00:12:18,440 --> 00:12:21,600 Speaker 7: known microbes and then like learning exactly how those microbes 241 00:12:21,640 --> 00:12:24,679 Speaker 7: affect immune development. And all other kinds of health outcomes. 242 00:12:25,320 --> 00:12:28,560 Speaker 7: So noobiotics are a really important tool in microbiome science. 243 00:12:28,600 --> 00:12:32,840 Speaker 7: Where we can intentionally cultivate mice or zebrafish or like 244 00:12:32,920 --> 00:12:34,960 Speaker 7: pick your model animal of choice. We can't really do 245 00:12:35,040 --> 00:12:38,480 Speaker 7: that with people though, With this exception of bubble Boy, 246 00:12:38,880 --> 00:12:43,840 Speaker 7: who was a boy who had severe immune deficiency, and 247 00:12:44,240 --> 00:12:47,480 Speaker 7: I mean kind of brilliantly, considering the technology available at 248 00:12:47,480 --> 00:12:51,280 Speaker 7: the time, his medical community the doctors around him figured 249 00:12:51,280 --> 00:12:54,120 Speaker 7: out how to keep him in essentially sterile conditions, like 250 00:12:54,240 --> 00:12:58,040 Speaker 7: in a plastic bubble with oxygen pumped in, so that 251 00:12:58,120 --> 00:13:01,040 Speaker 7: he was never exposed to microbes that would quickly kill him. 252 00:13:01,440 --> 00:13:04,440 Speaker 7: There's a movie about it too, So that's pretty rare 253 00:13:04,480 --> 00:13:08,000 Speaker 7: to have a human growing up with that little microbial exposure. 254 00:13:08,120 --> 00:13:10,800 Speaker 7: But at that time, we thought like, oh, the more antibiotics, 255 00:13:10,800 --> 00:13:13,840 Speaker 7: the more better. Just like pop them down, it'll probably 256 00:13:13,880 --> 00:13:16,000 Speaker 7: help you. There was not really a feeling of loss 257 00:13:16,040 --> 00:13:18,520 Speaker 7: that by taking antibiotics you were destroying something. 258 00:13:19,040 --> 00:13:21,840 Speaker 3: And I feel like since then we've gone in the 259 00:13:21,920 --> 00:13:25,840 Speaker 3: opposite direction where whenever you're listening to a podcast you 260 00:13:25,880 --> 00:13:29,120 Speaker 3: get advertisements about bacteria that are so good for you, 261 00:13:29,440 --> 00:13:31,960 Speaker 3: And have we sort of gone in the opposite direction. 262 00:13:32,120 --> 00:13:33,760 Speaker 3: Are we finding a happy medium? 263 00:13:34,200 --> 00:13:36,560 Speaker 7: That's a good question. I feel like the ads you 264 00:13:36,640 --> 00:13:40,840 Speaker 7: hear are sometimes coming from the eighty billion dollar probiotic industry, 265 00:13:41,400 --> 00:13:44,880 Speaker 7: which is not really resting upon too much evidence, to 266 00:13:44,920 --> 00:13:47,760 Speaker 7: be honest, and so the kinds of things you hear 267 00:13:47,800 --> 00:13:51,040 Speaker 7: in those ads are often not all that close to reality. 268 00:13:51,600 --> 00:13:53,439 Speaker 7: So I guess it depends a little bit about which 269 00:13:53,520 --> 00:13:55,760 Speaker 7: parts you're hearing about. I think the message that we 270 00:13:55,800 --> 00:13:59,720 Speaker 7: shouldn't just pop antibiotics without any concern for the damage 271 00:13:59,720 --> 00:14:02,000 Speaker 7: they can cause, I feel like that has gotten much better. 272 00:14:02,480 --> 00:14:04,560 Speaker 7: So yeah, I think we have come to appreciate that 273 00:14:04,640 --> 00:14:08,480 Speaker 7: taking antibiotics has a consequence that's not only positive. Although 274 00:14:08,559 --> 00:14:10,600 Speaker 7: keep in mind that eighty percent of the antibiotics used 275 00:14:10,600 --> 00:14:12,760 Speaker 7: in the United States at least are in agriculture, so 276 00:14:13,040 --> 00:14:16,000 Speaker 7: our own human consumption can only have so much impact 277 00:14:16,200 --> 00:14:18,400 Speaker 7: on avoiding the antibiotic resistance crisis. 278 00:14:19,160 --> 00:14:21,680 Speaker 1: All right, So microbes are these little critters that are 279 00:14:21,720 --> 00:14:23,960 Speaker 1: too small to see, which frankly feels to me like 280 00:14:24,000 --> 00:14:26,400 Speaker 1: a little fuzzy, like if I have terrible vision, are 281 00:14:26,400 --> 00:14:28,160 Speaker 1: there some things that are microbes to me? Like if 282 00:14:28,160 --> 00:14:30,840 Speaker 1: I can't see cats to the count's microbes because I 283 00:14:30,920 --> 00:14:34,360 Speaker 1: have like very bad eyesight. But as usual, it's biology, 284 00:14:34,440 --> 00:14:36,640 Speaker 1: so it's fuzzy, no, I mean. 285 00:14:36,920 --> 00:14:39,600 Speaker 7: It's definitely like you know, if I had a slide, 286 00:14:39,720 --> 00:14:42,880 Speaker 7: I could give you some images of the scale bar 287 00:14:43,000 --> 00:14:46,120 Speaker 7: and the sizes of viruses and bacteria. Like your average 288 00:14:46,160 --> 00:14:49,640 Speaker 7: bacterial cell is about ten times smaller than your average 289 00:14:49,880 --> 00:14:53,200 Speaker 7: eukaryotic cell. Eukaryotic cells have a nucleus. Those are the 290 00:14:53,240 --> 00:14:54,920 Speaker 7: kind of cells that make up our bodies, and there's 291 00:14:54,960 --> 00:14:58,720 Speaker 7: also unicellular versions of them. But I mean, yeah, the 292 00:14:58,760 --> 00:15:01,000 Speaker 7: point is just that they're tiny, and they tend to 293 00:15:01,040 --> 00:15:02,200 Speaker 7: be unicellular too. 294 00:15:03,000 --> 00:15:06,840 Speaker 1: I mean some dogs are tiny too. Around la fit 295 00:15:06,960 --> 00:15:09,080 Speaker 1: people's pursus dogs all. 296 00:15:09,080 --> 00:15:13,680 Speaker 7: Right, those dogs have like four thousand times as many 297 00:15:13,720 --> 00:15:16,680 Speaker 7: microbes in their guts, is what I'm saying, though, I. 298 00:15:16,640 --> 00:15:19,760 Speaker 1: Mean toy dogs are pretty small. Anyway. You're the expert 299 00:15:19,840 --> 00:15:23,920 Speaker 1: on it, So that's a And so you've walked us 300 00:15:23,920 --> 00:15:26,320 Speaker 1: through this history where we learned about microbes. Some of 301 00:15:26,360 --> 00:15:29,120 Speaker 1: them cause disease, but now we have a more nuanced take. 302 00:15:29,200 --> 00:15:32,280 Speaker 1: So tell us, like, if microbes are part of us, 303 00:15:32,440 --> 00:15:35,040 Speaker 1: where on the body do they live? Where can I 304 00:15:35,080 --> 00:15:36,560 Speaker 1: find microbes in my body. 305 00:15:37,040 --> 00:15:40,200 Speaker 7: I mean, you can find microbes literally everywhere, whether it's 306 00:15:40,240 --> 00:15:44,320 Speaker 7: your body or not, and so that's actually a challenge. 307 00:15:44,400 --> 00:15:47,120 Speaker 7: Sometimes I start my talks out with this challenge that, 308 00:15:47,280 --> 00:15:50,320 Speaker 7: like a key postulate of microbial ecology is that nothing 309 00:15:50,360 --> 00:15:54,040 Speaker 7: is sterile, and then I try to think of maybe 310 00:15:54,120 --> 00:15:57,880 Speaker 7: exceptions to that, like places where life really can't be sustained. 311 00:15:57,920 --> 00:16:00,680 Speaker 7: But I mean you could just check out and environment 312 00:16:00,800 --> 00:16:05,840 Speaker 7: deep sea, ocean, vents, hot springs, you know, the outside 313 00:16:05,920 --> 00:16:07,680 Speaker 7: of a spaceship, like. 314 00:16:07,960 --> 00:16:09,680 Speaker 1: What about uranus is urinus sterile? 315 00:16:11,560 --> 00:16:17,720 Speaker 7: Wow, Well that depends a bit on the meeting, but 316 00:16:17,960 --> 00:16:22,600 Speaker 7: answer well, I think there are places that have very 317 00:16:22,720 --> 00:16:27,920 Speaker 7: very low microbial load and some materials that can't really 318 00:16:27,960 --> 00:16:31,440 Speaker 7: sustain microbial life so well, like maybe glass for example. 319 00:16:32,160 --> 00:16:34,880 Speaker 7: But on average, you know, on your body, which was 320 00:16:34,920 --> 00:16:38,760 Speaker 7: your question, we have really really dense microbial colonization in 321 00:16:38,800 --> 00:16:42,400 Speaker 7: our gut. Those are mostly microbes that can't survive with oxygen, 322 00:16:42,480 --> 00:16:46,040 Speaker 7: Like they're called anaerobes, so they live without oxygen. Most 323 00:16:46,080 --> 00:16:48,040 Speaker 7: of the microbes in your gut are anaerobes, which I 324 00:16:48,120 --> 00:16:49,960 Speaker 7: just think is amazing because we obviously live in a 325 00:16:49,960 --> 00:16:52,160 Speaker 7: world with oxygen, so it's kind of crazy. How all 326 00:16:52,160 --> 00:16:54,240 Speaker 7: these anaerobes colonize our bodies. 327 00:16:54,320 --> 00:16:57,120 Speaker 3: We're reversed bubble boys for the bacteria in our guts. 328 00:16:57,920 --> 00:17:01,840 Speaker 7: Yeah, exactly. Even your teeth have really strict anaerobes growing 329 00:17:01,880 --> 00:17:04,560 Speaker 7: on them, so your oral cavity is super super densely 330 00:17:04,560 --> 00:17:08,560 Speaker 7: colonized with microbes. Like the number of microbes per density 331 00:17:08,760 --> 00:17:11,239 Speaker 7: is about the same in your oral cavity and in 332 00:17:11,280 --> 00:17:13,600 Speaker 7: your gut, And like in a soil sample where they're 333 00:17:13,760 --> 00:17:17,120 Speaker 7: famous for being teeming with microbes, and in your oral 334 00:17:17,119 --> 00:17:20,480 Speaker 7: cavity there's just gradients of microbes that gobble up the 335 00:17:20,520 --> 00:17:23,320 Speaker 7: oxygen at the surface, so that shields the ones underneath 336 00:17:23,560 --> 00:17:25,040 Speaker 7: so that the anaerobs can survive. 337 00:17:25,720 --> 00:17:27,879 Speaker 1: Why do you say oral cavity instead of mouth? 338 00:17:28,520 --> 00:17:31,119 Speaker 7: Wow? I mean mouth is probably a better choice. I 339 00:17:31,160 --> 00:17:33,320 Speaker 7: see what you're saying, But I guess I just got 340 00:17:33,320 --> 00:17:36,680 Speaker 7: so used to writing papers about oral microbiomes and oral cavities, 341 00:17:36,720 --> 00:17:40,000 Speaker 7: And like in the Human Microbiome Project, there were seventeen 342 00:17:40,080 --> 00:17:43,280 Speaker 7: sampling sites in the oral cavity. There's symmetry, Like your 343 00:17:43,320 --> 00:17:45,960 Speaker 7: two back top teeth on each side of your mouth 344 00:17:46,359 --> 00:17:49,679 Speaker 7: have more similar microbial communities compared to ones closer to 345 00:17:49,720 --> 00:17:52,959 Speaker 7: the surface having to do with like nutrient access, and 346 00:17:53,040 --> 00:17:54,760 Speaker 7: so I think I'm just thinking about that. 347 00:17:54,800 --> 00:17:57,280 Speaker 3: When I say it, we've gotten a little bit farther 348 00:17:57,280 --> 00:17:59,080 Speaker 3: away from my favorite topic. So first I want to 349 00:17:59,119 --> 00:18:01,240 Speaker 3: point out that Annuel was the first one to mention 350 00:18:01,400 --> 00:18:04,080 Speaker 3: poop and butts in this episode, So I win. 351 00:18:04,320 --> 00:18:04,680 Speaker 1: I win. 352 00:18:04,880 --> 00:18:07,840 Speaker 3: You can't always blame the biologists. But I've been dying 353 00:18:07,880 --> 00:18:12,520 Speaker 3: to ask you. So I heard that our bodies have 354 00:18:13,040 --> 00:18:16,800 Speaker 3: so many microbes, that we have more microbes in our 355 00:18:16,840 --> 00:18:19,959 Speaker 3: body than we do cells. But then I heard that 356 00:18:20,200 --> 00:18:24,520 Speaker 3: the balance of power changes immediately following a bowel movement 357 00:18:24,680 --> 00:18:29,359 Speaker 3: because there's so many bacteria in our feces. What is 358 00:18:29,400 --> 00:18:30,840 Speaker 3: the truth, Katrina, I have to know. 359 00:18:31,640 --> 00:18:34,280 Speaker 7: Wow, Well, that's an awesome question, and it's been a 360 00:18:34,280 --> 00:18:36,480 Speaker 7: real topic of debate, and it's funny because it's like 361 00:18:37,119 --> 00:18:40,320 Speaker 7: the intro slide to every microbiome talk for about ten 362 00:18:40,400 --> 00:18:43,600 Speaker 7: years was all about how there's ten times as many 363 00:18:43,680 --> 00:18:46,480 Speaker 7: microbial cells as human cells and an average human body. 364 00:18:47,000 --> 00:18:50,160 Speaker 7: But then we redid our back of the envelope calculations, 365 00:18:50,240 --> 00:18:51,919 Speaker 7: so now we call it front of the envelope, and 366 00:18:51,920 --> 00:18:54,560 Speaker 7: now the ratio is estimated to be more like one 367 00:18:54,600 --> 00:18:58,040 Speaker 7: to one, but like both the numerator and the denominator 368 00:18:58,160 --> 00:19:01,320 Speaker 7: are like highly influx here. I wouldn't swear the life 369 00:19:01,359 --> 00:19:04,000 Speaker 7: of my children on these calculations or anything like that, 370 00:19:04,040 --> 00:19:04,720 Speaker 7: because it's. 371 00:19:04,560 --> 00:19:07,760 Speaker 1: Really good too, but. 372 00:19:07,800 --> 00:19:10,359 Speaker 7: Like even just estimating the number of cells in a 373 00:19:10,440 --> 00:19:11,080 Speaker 7: human body. 374 00:19:11,160 --> 00:19:13,480 Speaker 1: Wait, sorry, are there science conversations that you have that 375 00:19:13,520 --> 00:19:15,639 Speaker 1: I'm not in where you are swearing the life of 376 00:19:15,640 --> 00:19:16,280 Speaker 1: our children? 377 00:19:16,760 --> 00:19:18,320 Speaker 7: No, definitely not. 378 00:19:19,359 --> 00:19:21,840 Speaker 1: I mean, I gotta wonder now, Daniel. 379 00:19:21,880 --> 00:19:23,840 Speaker 3: I feel like you're often on the show talking about 380 00:19:23,920 --> 00:19:26,200 Speaker 3: dangerous situations you'd put the kids in for the sake 381 00:19:26,200 --> 00:19:28,000 Speaker 3: of physics. I don't feel like you need to be 382 00:19:28,080 --> 00:19:29,120 Speaker 3: high and mighty about this. 383 00:19:29,760 --> 00:19:31,480 Speaker 1: I'm mostly talking about your kids, Kelly. 384 00:19:31,640 --> 00:19:32,840 Speaker 3: Oh oh wow. 385 00:19:33,080 --> 00:19:33,600 Speaker 7: Interesting. 386 00:19:34,800 --> 00:19:36,960 Speaker 3: I'm sending my kids to their grandparents' house when you 387 00:19:37,000 --> 00:19:38,640 Speaker 3: guys come to visit next week. 388 00:19:40,880 --> 00:19:43,120 Speaker 1: All right, Sona, you're telling us there's a lot of uncertainty. 389 00:19:43,119 --> 00:19:45,440 Speaker 1: We don't really even know whether there are more human 390 00:19:45,560 --> 00:19:47,159 Speaker 1: or microbial cells in our bodies. 391 00:19:47,240 --> 00:19:50,239 Speaker 7: I'd say that balance is closer to roughly even, and 392 00:19:50,280 --> 00:19:52,520 Speaker 7: I agree that when you have a bowel movement, the 393 00:19:52,920 --> 00:19:55,200 Speaker 7: balance would shift because you would lose a lot of 394 00:19:55,240 --> 00:19:58,360 Speaker 7: microbial cells every time, depending how much fiber you eat 395 00:19:58,359 --> 00:20:00,320 Speaker 7: and if you have really big bowel movements or not. 396 00:20:00,840 --> 00:20:06,000 Speaker 7: But no matter what, despite the number of cells, what 397 00:20:06,040 --> 00:20:10,200 Speaker 7: we can always say is that the diversity of metabolisms 398 00:20:10,320 --> 00:20:14,119 Speaker 7: in our body is heavily weighted towards the microbes, because 399 00:20:14,600 --> 00:20:18,440 Speaker 7: human cells can only pull off like a pretty small 400 00:20:18,520 --> 00:20:21,200 Speaker 7: number of metabolisms. Like the number of types of genes 401 00:20:21,280 --> 00:20:23,920 Speaker 7: is pretty small in comparison to the number of types 402 00:20:23,920 --> 00:20:27,399 Speaker 7: of genes that microbes carry. Each microbe can live in 403 00:20:27,440 --> 00:20:29,960 Speaker 7: a totally different niche, Like there's microbes that live with 404 00:20:30,040 --> 00:20:32,280 Speaker 7: no oxygen or microbes that can live with a little 405 00:20:32,280 --> 00:20:36,240 Speaker 7: bit of oxygen, and they each carry very unique genes 406 00:20:36,280 --> 00:20:39,280 Speaker 7: for breaking down all kinds of molecules. So like, our 407 00:20:39,359 --> 00:20:44,760 Speaker 7: metabolomic diversity is unquestionably much more coming from our microbes 408 00:20:44,800 --> 00:20:46,120 Speaker 7: than from our human cells. 409 00:20:46,600 --> 00:20:48,600 Speaker 1: All Right, So, I feel like we're transitioning from talking 410 00:20:48,640 --> 00:20:51,880 Speaker 1: about individual microbes to talking about like communities and microbes. 411 00:20:51,880 --> 00:20:54,399 Speaker 1: And you're telling us these live here and those live there. 412 00:20:54,840 --> 00:20:56,520 Speaker 1: And you hear the word all the time these days, 413 00:20:56,560 --> 00:20:59,800 Speaker 1: the microbiome. Yeah, so microbiome just a description of like 414 00:21:00,119 --> 00:21:02,040 Speaker 1: microbial communities. 415 00:21:01,960 --> 00:21:05,840 Speaker 7: Yes, exactly. So a microbiome is a community of the 416 00:21:05,920 --> 00:21:10,000 Speaker 7: microbes we just defined in a particular environment. So the 417 00:21:10,080 --> 00:21:14,199 Speaker 7: microbiome definition includes what the environment is. So like, the 418 00:21:14,280 --> 00:21:16,360 Speaker 7: kind of microbes that live in your gut where there's 419 00:21:16,400 --> 00:21:18,760 Speaker 7: not very much oxygen is very different than the kind 420 00:21:18,760 --> 00:21:20,760 Speaker 7: of microbes that live at the surface of the ocean, 421 00:21:20,760 --> 00:21:24,440 Speaker 7: where photosynthesis is a big deal. So it's about what 422 00:21:24,560 --> 00:21:27,080 Speaker 7: type of life is sustained in that environment. 423 00:21:27,680 --> 00:21:29,720 Speaker 1: So if I see like a bunch of ladies in 424 00:21:29,880 --> 00:21:32,879 Speaker 1: LA with one hundred tiny little dogs that are so 425 00:21:33,000 --> 00:21:36,080 Speaker 1: small that I can't see them, so those are all microbes, 426 00:21:36,080 --> 00:21:37,800 Speaker 1: and together they make a little microbiome. 427 00:21:39,720 --> 00:21:42,199 Speaker 7: I mean, I can't really just say yes to that. 428 00:21:43,520 --> 00:21:46,239 Speaker 7: And you can't see the dogs. That means they're in 429 00:21:46,280 --> 00:21:47,920 Speaker 7: your imagination. So then. 430 00:21:49,400 --> 00:21:50,719 Speaker 1: They're philosophical dogs. 431 00:21:50,800 --> 00:21:53,560 Speaker 7: You need some evidence to support your claims. I thought 432 00:21:53,600 --> 00:21:54,320 Speaker 7: you were a scientist. 433 00:21:55,680 --> 00:21:57,200 Speaker 1: Wow, I just do computer stuff. 434 00:21:57,240 --> 00:22:00,440 Speaker 3: Actually, it's good to know that. Next time I'm Daniel 435 00:22:00,440 --> 00:22:02,199 Speaker 3: and I have a conversation like this, it's okay to 436 00:22:02,320 --> 00:22:05,600 Speaker 3: just say I'm not humoring that. 437 00:22:07,240 --> 00:22:10,159 Speaker 7: Oh no, in theory, I see what you're saying, And like, 438 00:22:10,320 --> 00:22:14,200 Speaker 7: only Los Angeles would support one hundred people with microscopically 439 00:22:14,240 --> 00:22:16,960 Speaker 7: tiny dogs. So that's kind of special to that environment. 440 00:22:17,000 --> 00:22:18,560 Speaker 1: I see your point, So then I want to connect 441 00:22:18,600 --> 00:22:20,440 Speaker 1: it back to something you said earlier. You were talking 442 00:22:20,440 --> 00:22:22,480 Speaker 1: about the kinds of microbes that live in different parts 443 00:22:22,480 --> 00:22:25,240 Speaker 1: of our bodies. Do we have like one microbiome, like 444 00:22:25,320 --> 00:22:28,480 Speaker 1: one community of microbes or are there different communities and 445 00:22:28,560 --> 00:22:32,000 Speaker 1: microbes that live like in my oral cavity and on 446 00:22:32,040 --> 00:22:33,600 Speaker 1: my gut or on the tip of my nose. 447 00:22:33,880 --> 00:22:36,840 Speaker 7: Yeah, there's really big differences in the types of microbes 448 00:22:36,840 --> 00:22:39,680 Speaker 7: that live in your gut versus your oral cavity versus 449 00:22:39,680 --> 00:22:42,360 Speaker 7: like the dryer patches of your skin on your elbow 450 00:22:42,560 --> 00:22:46,080 Speaker 7: versus the oil ear patches of your skin in another 451 00:22:46,119 --> 00:22:48,520 Speaker 7: part of your body, like your armpits, say, and also 452 00:22:48,600 --> 00:22:51,320 Speaker 7: super interesting most of our bodies. On the skin, we 453 00:22:51,440 --> 00:22:54,679 Speaker 7: have a lot of diversity of bacteria, but on our feet, 454 00:22:54,720 --> 00:22:57,879 Speaker 7: which are more moist, we actually have more diversity of fungi. 455 00:22:58,680 --> 00:23:01,120 Speaker 7: And this is all in health anyway. If we start 456 00:23:01,119 --> 00:23:04,960 Speaker 7: talking about transplants, which I imagine we will, there's fecal transplants, 457 00:23:05,000 --> 00:23:10,200 Speaker 7: there's armpit transplants, there's ear microbiome transplants, and so getting 458 00:23:10,280 --> 00:23:14,040 Speaker 7: a healthy community of microbes going is really important to 459 00:23:14,080 --> 00:23:16,920 Speaker 7: our health. But even defining health, of course is really hard. 460 00:23:17,119 --> 00:23:18,760 Speaker 3: Well, can we try to talk a little bit more then, 461 00:23:18,760 --> 00:23:20,879 Speaker 3: about what these microbes are doing for us? So you 462 00:23:20,960 --> 00:23:23,600 Speaker 3: mentioned that a bunch of the metabolism that happens in 463 00:23:23,640 --> 00:23:27,720 Speaker 3: our body is caused by bacteria, and that sounds like 464 00:23:27,800 --> 00:23:30,159 Speaker 3: it could be helpful. So what are some things that 465 00:23:30,200 --> 00:23:31,560 Speaker 3: our bacteria do for us? 466 00:23:31,880 --> 00:23:32,080 Speaker 12: Oh? 467 00:23:32,119 --> 00:23:34,320 Speaker 7: What a great question. So I mean, to be honest, 468 00:23:34,359 --> 00:23:36,560 Speaker 7: a lot of this is still unknown. So that's what's 469 00:23:36,600 --> 00:23:38,959 Speaker 7: so fun about our field. I'd say most of the 470 00:23:38,960 --> 00:23:41,280 Speaker 7: things that microbes are doing we don't know what they 471 00:23:41,280 --> 00:23:45,000 Speaker 7: are yet. But things that they do, for example, are 472 00:23:45,119 --> 00:23:48,280 Speaker 7: they can break down fiber. So when you eat fiber 473 00:23:48,320 --> 00:23:53,040 Speaker 7: in your diet, actually human metabolism can't handle that at all, 474 00:23:53,119 --> 00:23:55,880 Speaker 7: but the anaerobes living in your gut they're really good 475 00:23:55,920 --> 00:23:59,320 Speaker 7: at breaking down fiber. And another example that I love 476 00:23:59,680 --> 00:24:02,399 Speaker 7: is the sugars in breast milk. They should actually be 477 00:24:02,400 --> 00:24:05,240 Speaker 7: called fibers as well. So in breast and milk, about 478 00:24:05,280 --> 00:24:08,000 Speaker 7: fifteen percent of the energy is in the form of 479 00:24:08,240 --> 00:24:12,639 Speaker 7: sugars or fibers that human metabolisms just can't access at all, 480 00:24:13,040 --> 00:24:15,840 Speaker 7: but the microbes can. And so this is a really 481 00:24:15,880 --> 00:24:20,240 Speaker 7: important moment in human history, Like what moment matters more 482 00:24:20,320 --> 00:24:22,560 Speaker 7: than when a baby is born. That clearly we wouldn't 483 00:24:22,600 --> 00:24:25,119 Speaker 7: just throw fifteen percent of the energy that's in breast 484 00:24:25,119 --> 00:24:28,920 Speaker 7: milk down the drain unless it was really sustaining something important. 485 00:24:29,680 --> 00:24:31,920 Speaker 7: And that fifteen percent of the energy in the breast 486 00:24:31,920 --> 00:24:36,240 Speaker 7: milk is sustaining specific microbes that can break down the 487 00:24:36,280 --> 00:24:40,160 Speaker 7: breast milk sugars. And then when a diaraleal pathogen comes 488 00:24:40,200 --> 00:24:42,880 Speaker 7: through and tries to take up residents in a baby gut, 489 00:24:42,960 --> 00:24:46,439 Speaker 7: it doesn't have access to that secret nutrient source. And 490 00:24:46,520 --> 00:24:50,080 Speaker 7: so a big protection mechanism for babies in parts of 491 00:24:50,080 --> 00:24:52,600 Speaker 7: the world where diarrheal illness is still a really big 492 00:24:52,640 --> 00:24:55,640 Speaker 7: deal is if you're breastfed and you have those microbes 493 00:24:55,640 --> 00:24:58,520 Speaker 7: that can break down the breast milk sugars, then the 494 00:24:58,720 --> 00:25:01,440 Speaker 7: when salmonilla comes through, it was just kind of like cupping, 495 00:25:01,680 --> 00:25:05,440 Speaker 7: and those special microbes like Biffido bacterias that can break 496 00:25:05,440 --> 00:25:08,680 Speaker 7: down the breast milk sugars dominate the baby gut. That's 497 00:25:08,720 --> 00:25:11,239 Speaker 7: probably how most baby guts were organized while they were 498 00:25:11,240 --> 00:25:13,439 Speaker 7: breast fed through human history. 499 00:25:13,920 --> 00:25:15,679 Speaker 1: So let me see if I understand you're telling me 500 00:25:15,720 --> 00:25:18,400 Speaker 1: that basically the first step in digestion, like I eat 501 00:25:18,400 --> 00:25:21,439 Speaker 1: a bowl of beans, it's not that my human mechanisms 502 00:25:21,480 --> 00:25:24,320 Speaker 1: get involved and break the beans down, but like microbes 503 00:25:24,320 --> 00:25:26,280 Speaker 1: are on the front line and they start the process 504 00:25:26,320 --> 00:25:28,200 Speaker 1: breaking things down because. 505 00:25:27,920 --> 00:25:31,040 Speaker 7: I can't the order of events there is a little different, Like, okay, 506 00:25:31,080 --> 00:25:33,280 Speaker 7: so you're eating your beans, they get to your stomach, 507 00:25:33,400 --> 00:25:37,160 Speaker 7: the stomach acid starts to break things down. Digestive enzymes 508 00:25:37,200 --> 00:25:41,520 Speaker 7: come in from your pancreas and small intestine area. So 509 00:25:41,680 --> 00:25:45,400 Speaker 7: actually the first chomp at most nutrients is coming from 510 00:25:45,680 --> 00:25:49,520 Speaker 7: earlier steps in your digestive tract. And actually the microbial 511 00:25:49,600 --> 00:25:51,920 Speaker 7: load is quite low, Like we do have microbes in 512 00:25:51,960 --> 00:25:55,080 Speaker 7: our stomach, but at not very high density, and same 513 00:25:55,119 --> 00:25:57,480 Speaker 7: with our small intestine. But by the time you get 514 00:25:57,480 --> 00:26:00,280 Speaker 7: to the colon, so you need to eat food that 515 00:26:00,480 --> 00:26:04,560 Speaker 7: don't get absorbed quickly earlier in your digestive tract to 516 00:26:04,640 --> 00:26:07,320 Speaker 7: give your microbes access to them. So if you just 517 00:26:07,400 --> 00:26:10,600 Speaker 7: eat white rice or processed foods, those get absorbed real 518 00:26:10,680 --> 00:26:14,199 Speaker 7: quick in your stomach and small intestine. But if you 519 00:26:14,240 --> 00:26:17,199 Speaker 7: eat things that take longer, then they get down to 520 00:26:17,240 --> 00:26:20,440 Speaker 7: where the most dense community of microbes lives, and then 521 00:26:20,480 --> 00:26:23,800 Speaker 7: you can give those microbes a chance to break down 522 00:26:23,840 --> 00:26:24,400 Speaker 7: the fibers. 523 00:26:24,720 --> 00:26:26,159 Speaker 1: I'm sure ken of these the questionbody, just want to 524 00:26:26,160 --> 00:26:28,960 Speaker 1: ask one quick follow up about the baby thing. You're 525 00:26:28,960 --> 00:26:33,640 Speaker 1: telling me that human mothers produce something that babies cannot 526 00:26:33,680 --> 00:26:37,440 Speaker 1: digest without microbes in their guts, which means, of course 527 00:26:37,480 --> 00:26:39,720 Speaker 1: that we've been doing this for a long long time. Yeah, right, 528 00:26:40,240 --> 00:26:43,280 Speaker 1: microbes probably evolved with us. But how do babies get 529 00:26:43,280 --> 00:26:45,720 Speaker 1: those microbes? Like, do they get them from the mom 530 00:26:45,880 --> 00:26:48,440 Speaker 1: Is it during the birth, is it during gestation? 531 00:26:48,840 --> 00:26:53,720 Speaker 7: It happens after birth, But actually there's probably many opportunities. 532 00:26:53,760 --> 00:26:56,080 Speaker 7: When something's really important, it's good to have a lot 533 00:26:56,080 --> 00:26:58,920 Speaker 7: of ways for it to happen, and so it's not 534 00:26:59,080 --> 00:27:01,919 Speaker 7: just only at birth. It could be at birth, but 535 00:27:02,200 --> 00:27:05,360 Speaker 7: I would imagine that in a village or a community 536 00:27:05,400 --> 00:27:08,040 Speaker 7: in human histories past, where there were a lot of 537 00:27:08,080 --> 00:27:12,280 Speaker 7: young children, that this would be passed between siblings and friends. 538 00:27:12,359 --> 00:27:14,720 Speaker 7: I mean, you just need to be in an environment 539 00:27:14,720 --> 00:27:18,000 Speaker 7: where that microbe exists. So it doesn't only have to 540 00:27:18,000 --> 00:27:19,639 Speaker 7: be at the moment of birth. It could be at 541 00:27:19,640 --> 00:27:22,120 Speaker 7: the moment of birth, but it could also be really 542 00:27:22,160 --> 00:27:24,280 Speaker 7: at any time in the beginning of life. 543 00:27:24,600 --> 00:27:26,480 Speaker 1: All right, Well, that takes us all the way back 544 00:27:26,520 --> 00:27:29,000 Speaker 1: into prehistory and the understanding of microbes. And we're going 545 00:27:29,080 --> 00:27:30,199 Speaker 1: to take a break and we're going to come back 546 00:27:30,200 --> 00:27:32,280 Speaker 1: and we're going to talk about the present and the 547 00:27:32,320 --> 00:27:49,760 Speaker 1: future of microbes. 548 00:27:51,119 --> 00:27:53,800 Speaker 3: And we're back, and okay, Katrina, I have a question 549 00:27:53,920 --> 00:27:55,760 Speaker 3: for you that I get asked a lot, and I 550 00:27:55,760 --> 00:27:57,640 Speaker 3: would love to know what the answer should be. So 551 00:27:58,080 --> 00:28:00,760 Speaker 3: I study parasites that manipulate the behavior of their house 552 00:28:01,560 --> 00:28:04,880 Speaker 3: and often people will say, Okay, I've heard that our 553 00:28:04,960 --> 00:28:07,760 Speaker 3: brains have nerves that go down to our stomach, and 554 00:28:07,800 --> 00:28:11,600 Speaker 3: that bacteria do things like release serotonin and dopamine that 555 00:28:11,680 --> 00:28:17,200 Speaker 3: can communicate with our brains. So are our behaviors controlled 556 00:28:17,640 --> 00:28:20,640 Speaker 3: by our microbiome? Can our microbiome be like you need 557 00:28:20,680 --> 00:28:24,280 Speaker 3: to eat more beans or something? So to what extent 558 00:28:25,240 --> 00:28:27,480 Speaker 3: are our microbes influencing our behavior? 559 00:28:27,800 --> 00:28:31,320 Speaker 7: Well, I mean a lot. For sure. There's definitely a 560 00:28:31,440 --> 00:28:35,600 Speaker 7: very strong gut brain axis, and we've known that for 561 00:28:35,640 --> 00:28:38,520 Speaker 7: a long time. Even independent of the microbes, we know 562 00:28:38,680 --> 00:28:42,080 Speaker 7: that a lot of our nervous and immune system is 563 00:28:42,160 --> 00:28:45,480 Speaker 7: in our gut, and so ninety percent of the serotonin 564 00:28:45,520 --> 00:28:48,040 Speaker 7: in your body is produced in your gut, for example, 565 00:28:48,560 --> 00:28:53,000 Speaker 7: and it's with the help of neuroendocrine cells in our guts, 566 00:28:53,480 --> 00:28:57,120 Speaker 7: but those cells are being manipulated by the microbes. So 567 00:28:57,160 --> 00:29:00,920 Speaker 7: there's a really strong connection between the dense community of 568 00:29:01,000 --> 00:29:04,720 Speaker 7: microbes in our guts and all of the different types 569 00:29:04,760 --> 00:29:08,200 Speaker 7: of cells lining our guts that are interacting with our 570 00:29:08,200 --> 00:29:12,200 Speaker 7: nervous system. So there is a very strong gut brain connection, 571 00:29:12,560 --> 00:29:15,840 Speaker 7: no question. And there's so much interesting evidence which is 572 00:29:16,240 --> 00:29:18,720 Speaker 7: hard to sort through about how if you improve your 573 00:29:18,760 --> 00:29:22,760 Speaker 7: diet you can improve symptoms of depression, or if you 574 00:29:22,840 --> 00:29:27,120 Speaker 7: meditate regularly you can improve your inflammatory state and your 575 00:29:27,120 --> 00:29:28,520 Speaker 7: microbiome composition. 576 00:29:29,000 --> 00:29:31,400 Speaker 1: Where you're saying, it goes both directions, not just microbes 577 00:29:31,480 --> 00:29:33,560 Speaker 1: or influencing how we think. But your brain can like 578 00:29:33,680 --> 00:29:35,120 Speaker 1: control the microbe somehow. 579 00:29:35,440 --> 00:29:38,920 Speaker 7: I mean when you say it like that, it sounds fantastical, 580 00:29:39,160 --> 00:29:42,400 Speaker 7: but I mean I literally just watched Joe Handlesman give 581 00:29:42,400 --> 00:29:45,120 Speaker 7: a talk last week about how people who were meditating 582 00:29:45,160 --> 00:29:49,640 Speaker 7: regularly had improvements in their microbiome, and defining an improvement 583 00:29:49,680 --> 00:29:51,320 Speaker 7: is a really hard thing to do in our field. 584 00:29:51,400 --> 00:29:54,040 Speaker 7: So you know, ask more questions if you want, but yes, 585 00:29:54,120 --> 00:29:58,280 Speaker 7: it goes in every direction. Because our microbe composition is 586 00:29:58,400 --> 00:30:02,120 Speaker 7: influenced by the environment, and if you do things that 587 00:30:02,280 --> 00:30:07,000 Speaker 7: helped to change your stress levels and the types of 588 00:30:07,040 --> 00:30:10,800 Speaker 7: inflammatory cells that your body is inhabited by, then that 589 00:30:10,920 --> 00:30:15,440 Speaker 7: changes the environment, and it changes which microbes are winning 590 00:30:15,480 --> 00:30:18,240 Speaker 7: the battle of survival in your gut at that moment, 591 00:30:18,480 --> 00:30:21,880 Speaker 7: and which microbes are there to break down the foods 592 00:30:21,920 --> 00:30:25,000 Speaker 7: that you're eating. So, yeah, there's a very tight connection 593 00:30:25,160 --> 00:30:28,960 Speaker 7: between our guts and our minds. But we're really at 594 00:30:28,960 --> 00:30:32,480 Speaker 7: the beginning of figuring that out. There's a few conditions 595 00:30:32,480 --> 00:30:35,000 Speaker 7: that we are starting to have really good evidence, like 596 00:30:35,360 --> 00:30:39,520 Speaker 7: for Parkinson's disease, there's symptoms in the gut arising well 597 00:30:39,520 --> 00:30:43,560 Speaker 7: before other symptoms like constipation, and that was one of 598 00:30:43,560 --> 00:30:46,640 Speaker 7: the clues that helped us try to disentangle how the 599 00:30:46,680 --> 00:30:51,320 Speaker 7: microbiome is involved in Parkinson's disease development. I'm so curious 600 00:30:51,360 --> 00:30:53,600 Speaker 7: in ten years, like what we're going to understand better. 601 00:30:54,120 --> 00:30:56,800 Speaker 7: But there's really cool evidence emerging all the time. 602 00:30:57,120 --> 00:30:59,840 Speaker 1: So you've mentioned several times that the microbe was played 603 00:31:00,360 --> 00:31:03,440 Speaker 1: roles in digestion, et cetera. Do we know what like 604 00:31:03,640 --> 00:31:07,720 Speaker 1: a good microbiome is, Like, do we understand what your 605 00:31:07,720 --> 00:31:10,920 Speaker 1: microbiome should be doing and what its composition should be, 606 00:31:11,560 --> 00:31:14,000 Speaker 1: and is that true in the gut or am my 607 00:31:14,160 --> 00:31:15,440 Speaker 1: nose or my ear. 608 00:31:16,000 --> 00:31:18,520 Speaker 7: That is still a science question, and I think it's 609 00:31:18,760 --> 00:31:22,320 Speaker 7: also maybe a philosophy question. Even just to define health 610 00:31:22,640 --> 00:31:24,920 Speaker 7: is really interesting, and our field has had a lot 611 00:31:24,960 --> 00:31:28,320 Speaker 7: of interaction with philosophers through the years to try to 612 00:31:28,360 --> 00:31:33,960 Speaker 7: define what health is. For example, at the operation nearby 613 00:31:34,080 --> 00:31:37,960 Speaker 7: in Testine for the product to VOUST, where they harvest 614 00:31:38,160 --> 00:31:41,840 Speaker 7: so called healthy fecal spores from so called healthy donors 615 00:31:42,440 --> 00:31:46,840 Speaker 7: in order to treat the diarrheal pathogen c DIFF. They 616 00:31:46,880 --> 00:31:49,440 Speaker 7: have to decide who can be a healthy donor and 617 00:31:49,480 --> 00:31:52,680 Speaker 7: they screen people and only one percent are considered eligible. 618 00:31:53,080 --> 00:31:55,880 Speaker 1: To be clear, what we're donating here, are bms right? 619 00:31:56,000 --> 00:31:58,320 Speaker 7: Yes, So they get volunteers to come and poop on 620 00:31:58,400 --> 00:32:00,479 Speaker 7: site four to six times per week and then they 621 00:32:00,520 --> 00:32:03,360 Speaker 7: harvest the spores out of their poop and that is 622 00:32:03,400 --> 00:32:06,240 Speaker 7: the product VOUST, which is being used to treat se DIFF. 623 00:32:06,240 --> 00:32:09,240 Speaker 7: It's one of two FDA approved microbiome therapies in the 624 00:32:09,240 --> 00:32:10,000 Speaker 7: country right now. 625 00:32:10,080 --> 00:32:12,480 Speaker 3: It's got to be hard to schedule, like you can't 626 00:32:12,520 --> 00:32:14,680 Speaker 3: just do that on cue. My son seems to be 627 00:32:14,720 --> 00:32:16,400 Speaker 3: able to. But he's the only one I've ever met 628 00:32:16,400 --> 00:32:17,000 Speaker 3: who can do that. 629 00:32:17,120 --> 00:32:19,560 Speaker 7: Yeah, I think they have like a big line in 630 00:32:19,600 --> 00:32:22,800 Speaker 7: the morning. So people who can do that regularly. I 631 00:32:22,880 --> 00:32:25,680 Speaker 7: remember asking in one of my classes ones like, who 632 00:32:25,760 --> 00:32:27,719 Speaker 7: knows when they're gonna poop every day? Like, is it 633 00:32:27,800 --> 00:32:29,960 Speaker 7: like something you know when it's gonna happen, or is. 634 00:32:29,880 --> 00:32:31,920 Speaker 1: It like you're asking people about this in class and 635 00:32:31,960 --> 00:32:33,840 Speaker 1: public that like raise their hand to talk about their 636 00:32:33,880 --> 00:32:34,560 Speaker 1: poop schedule. 637 00:32:34,880 --> 00:32:37,080 Speaker 7: Well, it was when I had somebody from the company 638 00:32:37,160 --> 00:32:39,600 Speaker 7: Voused visiting to speak and she had exactly the question 639 00:32:39,680 --> 00:32:42,280 Speaker 7: you just had, Kelly. Anyway, there were some people who 640 00:32:42,280 --> 00:32:44,200 Speaker 7: were like, how could you not know when you're gonna poop? 641 00:32:44,240 --> 00:32:46,000 Speaker 7: I always know when? And other people who were like, 642 00:32:46,080 --> 00:32:48,160 Speaker 7: I would never be able to guess that. That's clearly 643 00:32:48,360 --> 00:32:50,080 Speaker 7: like something that's different about each person. 644 00:32:50,320 --> 00:32:50,640 Speaker 2: Huh. 645 00:32:50,680 --> 00:32:53,400 Speaker 7: But you know, one percent of people are not the 646 00:32:53,440 --> 00:32:56,080 Speaker 7: only healthy people. And I think that we need to 647 00:32:56,080 --> 00:32:58,200 Speaker 7: think about what we mean by health differently. When I'm 648 00:32:58,200 --> 00:33:02,760 Speaker 7: writing my ethics view approval documents for the studies that 649 00:33:02,800 --> 00:33:05,640 Speaker 7: I do, I have a very expansive definition of what 650 00:33:05,680 --> 00:33:08,240 Speaker 7: I think health is, And to me, health is someone 651 00:33:08,240 --> 00:33:11,320 Speaker 7: who's out and about living their life, like a student 652 00:33:11,360 --> 00:33:14,440 Speaker 7: in my class is definitely considered healthy that otherwise they 653 00:33:14,480 --> 00:33:16,440 Speaker 7: couldn't like show up and be a college student if 654 00:33:16,440 --> 00:33:19,920 Speaker 7: they have some allergy or some other kind of defined 655 00:33:20,000 --> 00:33:22,600 Speaker 7: disease it's been diagnosed. In my mind, that doesn't like 656 00:33:22,680 --> 00:33:25,080 Speaker 7: knock them out of the category of being a healthy person. 657 00:33:25,720 --> 00:33:28,920 Speaker 7: And so that's a really difficult question to answer. But 658 00:33:29,000 --> 00:33:31,680 Speaker 7: your question was do we know what a healthy microbiome is? 659 00:33:31,840 --> 00:33:34,400 Speaker 7: And that was actually what the goal of the Human 660 00:33:34,440 --> 00:33:37,280 Speaker 7: Microbiome Project was. It started in two thousand and six 661 00:33:37,360 --> 00:33:39,480 Speaker 7: and they got three hundred healthy donors in the United 662 00:33:39,520 --> 00:33:45,040 Speaker 7: States to give samples, and healthy was defined somewhat more inclusively, 663 00:33:45,080 --> 00:33:47,600 Speaker 7: I think than the one percent that were accepted in 664 00:33:47,640 --> 00:33:51,760 Speaker 7: that other donation context. And the goal was, like, what's 665 00:33:51,800 --> 00:33:54,440 Speaker 7: the core human microbiome? Like, what are microbes that are 666 00:33:54,480 --> 00:33:58,640 Speaker 7: shared between everyone? And the fascinating thing was that every 667 00:33:58,680 --> 00:34:01,480 Speaker 7: time you added one more to the study, the then 668 00:34:01,520 --> 00:34:05,440 Speaker 7: diagram overlap got smaller and smaller until there was nothing left. 669 00:34:05,480 --> 00:34:08,640 Speaker 7: So there were no core human microbes. Everybody is different 670 00:34:08,760 --> 00:34:11,640 Speaker 7: enough that there just really isn't a core human microbiome, 671 00:34:11,960 --> 00:34:13,200 Speaker 7: depending how you define it. 672 00:34:13,600 --> 00:34:17,200 Speaker 1: So you're saying, for example, person A is totally healthy 673 00:34:17,239 --> 00:34:20,360 Speaker 1: and living their lives and having great poops and doesn't 674 00:34:20,400 --> 00:34:23,400 Speaker 1: have anything in common gut bacteria wise with person B, 675 00:34:23,520 --> 00:34:26,960 Speaker 1: who's also healthy and can eat beans and doesn't have 676 00:34:27,160 --> 00:34:28,240 Speaker 1: terrible digestive problem. 677 00:34:28,640 --> 00:34:31,160 Speaker 7: Yeah, people are extremely different from each other. If you 678 00:34:31,200 --> 00:34:33,760 Speaker 7: only had two people, I bet you would find some overlap. 679 00:34:33,840 --> 00:34:35,840 Speaker 7: But by the time you get to about ten people, 680 00:34:36,000 --> 00:34:39,000 Speaker 7: you probably don't have much overlap left anymore. And then 681 00:34:39,400 --> 00:34:41,960 Speaker 7: really big differences occur when you look around the world, 682 00:34:42,239 --> 00:34:45,399 Speaker 7: and so there's really cool patterns of people who live 683 00:34:45,600 --> 00:34:49,000 Speaker 7: in less industrialized places, where they eat more plants and 684 00:34:49,120 --> 00:34:52,640 Speaker 7: less processed food, their guts tend to be dominated by 685 00:34:52,719 --> 00:34:56,360 Speaker 7: plant breakdown microbes that are good at breaking down fiber 686 00:34:56,440 --> 00:34:59,319 Speaker 7: and probably have other properties too, Whereas if you look 687 00:34:59,360 --> 00:35:02,120 Speaker 7: in the industry world, and this is like so scary 688 00:35:02,120 --> 00:35:05,759 Speaker 7: to meet that most people in the industrialized world have 689 00:35:05,840 --> 00:35:08,719 Speaker 7: a lot of mucus breakdown bugs in their gut. So 690 00:35:08,840 --> 00:35:12,600 Speaker 7: basically we're starving our guts of fiber, and as a result, 691 00:35:12,719 --> 00:35:15,239 Speaker 7: the microbes are like turning to us and just like 692 00:35:15,360 --> 00:35:18,440 Speaker 7: eating the mucus that's produced by the cells lining our gut. 693 00:35:19,000 --> 00:35:21,920 Speaker 7: So there's this bug called Acromancia that's very common in 694 00:35:21,960 --> 00:35:26,279 Speaker 7: the industrialized world, and bizarrely, it's even marketed as a 695 00:35:26,280 --> 00:35:30,680 Speaker 7: probiotic because it has been associated with positive outcomes. But 696 00:35:30,760 --> 00:35:33,719 Speaker 7: it's breaking down the mucus, which is the only thing 697 00:35:33,960 --> 00:35:37,560 Speaker 7: between you and sepsis. You have like literally millions of 698 00:35:37,600 --> 00:35:40,759 Speaker 7: cells of microbes in your colon and there's one layer 699 00:35:40,880 --> 00:35:45,239 Speaker 7: of cells, this epithelial lining of cells lining your gut, 700 00:35:45,320 --> 00:35:48,040 Speaker 7: and if that barrier breaks down, the microbes get into 701 00:35:48,040 --> 00:35:50,640 Speaker 7: your blood and that's the blood infection that's called sepsis. 702 00:35:50,640 --> 00:35:54,400 Speaker 7: That's deadly. And so your mucus lining, that one layer 703 00:35:54,440 --> 00:35:57,040 Speaker 7: of cells is a really important part of the barrier 704 00:35:57,800 --> 00:36:01,080 Speaker 7: protecting you. And so we're we have a lot of 705 00:36:01,160 --> 00:36:04,279 Speaker 7: bugs that are breaking down that mucus. Maybe there's some 706 00:36:04,400 --> 00:36:07,200 Speaker 7: kind of feedback there. I mean, these are all science questions. Maybe, 707 00:36:07,239 --> 00:36:10,200 Speaker 7: like the bugs breaking down the mucus stimulate its production, 708 00:36:10,320 --> 00:36:13,520 Speaker 7: and maybe that's not all bad. But just the fact 709 00:36:13,560 --> 00:36:16,880 Speaker 7: that it's so common in the industrialized world and missing 710 00:36:17,520 --> 00:36:19,480 Speaker 7: in the parts of the world where people eat more plants, 711 00:36:19,480 --> 00:36:21,040 Speaker 7: it kind of makes me want to have the plant 712 00:36:21,080 --> 00:36:24,400 Speaker 7: type of microbiome, not the mucus breakdown one. 713 00:36:24,680 --> 00:36:27,960 Speaker 1: So then where can we expect similarities between microbiomes? Like 714 00:36:28,239 --> 00:36:29,759 Speaker 1: you and I live in the same house, you mostly 715 00:36:29,800 --> 00:36:32,160 Speaker 1: use similar foods, use the same toilets. Do we have 716 00:36:32,239 --> 00:36:34,280 Speaker 1: similar microbiomes? Do we expect them to be similar? 717 00:36:34,640 --> 00:36:38,440 Speaker 7: Definitely. That's one of the biggest signatures in every microbiome study, 718 00:36:38,520 --> 00:36:41,279 Speaker 7: after the individual, is the household and the family. So 719 00:36:41,320 --> 00:36:44,960 Speaker 7: when you collect samples from people who live together, they 720 00:36:44,960 --> 00:36:48,200 Speaker 7: have so much in common, and so that's a really 721 00:36:48,280 --> 00:36:50,560 Speaker 7: really cool way to do a study. Like my favorite 722 00:36:50,560 --> 00:36:52,960 Speaker 7: way to do a study is with household controls, so 723 00:36:53,040 --> 00:36:56,840 Speaker 7: you can compare people with the same background, and otherwise 724 00:36:56,840 --> 00:36:59,319 Speaker 7: to do longitudinal studies where you take samples from the 725 00:36:59,360 --> 00:37:02,200 Speaker 7: same person through an intervention and then use their starting 726 00:37:02,239 --> 00:37:05,080 Speaker 7: point samples as the baseline, because if you try to 727 00:37:05,080 --> 00:37:07,480 Speaker 7: do it cross sectionally where everyone is so different, it 728 00:37:07,600 --> 00:37:10,720 Speaker 7: just doesn't work at all. And back to the household question. 729 00:37:10,800 --> 00:37:14,040 Speaker 7: I mean, I really love studies that get into that. 730 00:37:14,239 --> 00:37:17,160 Speaker 7: And I have a friend down in San Diego, David Pride, 731 00:37:17,800 --> 00:37:20,640 Speaker 7: and he did a study once where he compared married 732 00:37:20,680 --> 00:37:23,160 Speaker 7: couples who'd been living together for a long time with 733 00:37:23,280 --> 00:37:26,800 Speaker 7: Craigslist roommates who moved in together, and after six weeks 734 00:37:27,280 --> 00:37:31,480 Speaker 7: they shared a quarter of the viruses in their gut communities. 735 00:37:31,520 --> 00:37:34,000 Speaker 7: So sharing a kitchen and a bathroom is enough to 736 00:37:34,040 --> 00:37:36,040 Speaker 7: share a lot, huh. 737 00:37:35,560 --> 00:37:37,279 Speaker 1: The Craigslist connection, Yeah, yep. 738 00:37:37,960 --> 00:37:41,479 Speaker 3: How much do our own individual microbiomes change over time? 739 00:37:41,520 --> 00:37:43,719 Speaker 3: So if you looked at a family now or five 740 00:37:43,840 --> 00:37:46,880 Speaker 3: years down the road, how consistent would their microbiome be. 741 00:37:47,440 --> 00:37:51,560 Speaker 7: They're quite consistent through time in families and households, but 742 00:37:51,760 --> 00:37:56,280 Speaker 7: they're evolving because you know, microbes have high mutation rates. 743 00:37:56,480 --> 00:38:00,400 Speaker 7: They don't correct themselves as much as ourselves do. So 744 00:38:00,840 --> 00:38:03,520 Speaker 7: in a virus community, for example, there was one grad 745 00:38:03,560 --> 00:38:06,560 Speaker 7: student who took samples from himself throughout grad school, which 746 00:38:06,560 --> 00:38:09,319 Speaker 7: took a couple of years, and between the beginning and 747 00:38:09,440 --> 00:38:12,919 Speaker 7: end of grad school, some of the viruses in their gut. 748 00:38:12,960 --> 00:38:14,960 Speaker 7: I'm sure it was anonymous, so maybe I shouldn't say 749 00:38:14,960 --> 00:38:17,279 Speaker 7: the name of this dadue. But anyway, some of the 750 00:38:17,360 --> 00:38:21,040 Speaker 7: viruses had mutated more than three percent in their genomes, 751 00:38:21,200 --> 00:38:23,719 Speaker 7: which is the definition of a new virus. Each of 752 00:38:23,719 --> 00:38:25,520 Speaker 7: our guts is kind of like its own little chema 753 00:38:25,560 --> 00:38:29,879 Speaker 7: stat where evolution can keep happening, and so through time, 754 00:38:30,320 --> 00:38:32,840 Speaker 7: enough mutations arise that it could even be considered a 755 00:38:32,880 --> 00:38:36,160 Speaker 7: new species of virus that's emerging. The other thing that 756 00:38:36,200 --> 00:38:38,920 Speaker 7: happens is like say you travel and get diarrhea and 757 00:38:38,960 --> 00:38:41,640 Speaker 7: really shake things up, or you take antibiotics, you can 758 00:38:41,760 --> 00:38:45,960 Speaker 7: kind of like get your community steering to take a 759 00:38:46,000 --> 00:38:48,319 Speaker 7: sharp turn after things like that. 760 00:38:48,880 --> 00:38:50,840 Speaker 1: Wait, walk us through what's happening there, Like when you 761 00:38:50,880 --> 00:38:53,399 Speaker 1: get diarrhea or you get seedp what's going on there? 762 00:38:53,440 --> 00:38:56,400 Speaker 1: Something is coming in and out competing the microbes in 763 00:38:56,440 --> 00:38:58,080 Speaker 1: our guts or what's going on? 764 00:38:58,560 --> 00:39:03,880 Speaker 7: Yeah, exactly. So oftentimes a diarrheal pathogen, what will happen 765 00:39:03,960 --> 00:39:06,160 Speaker 7: is that they'll come in with some toxin or some 766 00:39:06,360 --> 00:39:09,760 Speaker 7: like really big hammer that causes big. 767 00:39:09,680 --> 00:39:13,160 Speaker 1: Changes, meaning that it kills the other microbes. 768 00:39:12,920 --> 00:39:16,280 Speaker 7: Or that it just triggers an enormous immune response, which 769 00:39:16,400 --> 00:39:19,400 Speaker 7: brings in a lot of oxidative stress. And I was 770 00:39:19,440 --> 00:39:22,480 Speaker 7: just telling you how the microbes in our colon's hate oxygen. 771 00:39:22,960 --> 00:39:27,360 Speaker 7: Well inflammation is basically a pile of oxygen. So bringing 772 00:39:27,400 --> 00:39:32,360 Speaker 7: in all those inflammatory cells and molecules, that's a tough 773 00:39:32,440 --> 00:39:34,400 Speaker 7: condition for a lot of the bugs that live in 774 00:39:34,440 --> 00:39:38,040 Speaker 7: our gut. And then you'll have an outgrowth of the 775 00:39:38,160 --> 00:39:41,480 Speaker 7: kinds of bugs that can tolerate oxygen. In fact, when 776 00:39:41,560 --> 00:39:44,880 Speaker 7: you study the microbiomes of people who have a terrible 777 00:39:44,880 --> 00:39:48,640 Speaker 7: gut infection, you don't often find that the bug causing 778 00:39:48,680 --> 00:39:51,960 Speaker 7: the infection is the most numerous. This really surprised me. Actually, 779 00:39:51,960 --> 00:39:54,759 Speaker 7: I've done a few studies like this with lustratia deficial 780 00:39:54,880 --> 00:39:58,400 Speaker 7: infections here at the CI Medical Center, and my naive 781 00:39:58,440 --> 00:40:01,440 Speaker 7: expectation was that you I see like, oh, it's ninety 782 00:40:01,480 --> 00:40:03,520 Speaker 7: percent seed difts, so they have a sea diff infection. 783 00:40:03,600 --> 00:40:04,960 Speaker 7: But that's not what you see at all. You just 784 00:40:05,000 --> 00:40:08,120 Speaker 7: see a bunch of bugs that can handle oxygen basically, 785 00:40:08,760 --> 00:40:11,359 Speaker 7: and then there's probably a small number of sea diff 786 00:40:11,440 --> 00:40:14,759 Speaker 7: cells that are just dumping toxin that's causing all that inflammation. 787 00:40:15,560 --> 00:40:18,880 Speaker 1: That's really mind blowing, I mean, especially if you start 788 00:40:18,920 --> 00:40:21,960 Speaker 1: from the point of view of like, diseases are microbes 789 00:40:22,000 --> 00:40:24,920 Speaker 1: that come in, pathogens come in and colonize the humans. 790 00:40:25,400 --> 00:40:26,960 Speaker 1: Now you're giving us a whole new way to think 791 00:40:27,000 --> 00:40:31,520 Speaker 1: about what disease is. Now it's like microbial war where 792 00:40:31,560 --> 00:40:33,719 Speaker 1: what's really being damaged are not the human cells, but 793 00:40:33,800 --> 00:40:36,600 Speaker 1: like the microbes on our side that were doing their 794 00:40:36,680 --> 00:40:37,479 Speaker 1: job for us. 795 00:40:37,800 --> 00:40:38,040 Speaker 7: Yep. 796 00:40:38,120 --> 00:40:39,960 Speaker 1: So it's really we're sort of like a host. We're 797 00:40:40,040 --> 00:40:42,840 Speaker 1: just like the battleground for this microbial confrontation. 798 00:40:43,480 --> 00:40:46,880 Speaker 7: Yeah, exactly. I really like the concept of a holo biome, 799 00:40:47,520 --> 00:40:51,040 Speaker 7: which is the idea that you know, you are your 800 00:40:51,080 --> 00:40:54,920 Speaker 7: own genome and cells, and then you are host to 801 00:40:55,239 --> 00:40:59,279 Speaker 7: a community of microbes which comes from the environment that 802 00:40:59,320 --> 00:41:02,080 Speaker 7: you live in. So all the microbes in the environment 803 00:41:02,120 --> 00:41:04,440 Speaker 7: that you live in, and then some subset of them 804 00:41:04,560 --> 00:41:08,280 Speaker 7: colonizes you. And so part of your environment is your diet, 805 00:41:08,400 --> 00:41:10,279 Speaker 7: and part of it is like how much time you 806 00:41:10,320 --> 00:41:13,680 Speaker 7: spend playing with dirt, so like your exposure to microbes. 807 00:41:13,680 --> 00:41:16,279 Speaker 7: Who your roommates are, you know, stuff like that. Like 808 00:41:16,280 --> 00:41:18,040 Speaker 7: sometimes people ask me, well, how can I get a 809 00:41:18,080 --> 00:41:20,400 Speaker 7: healthy microbiome if I don't have one yet, And like 810 00:41:20,480 --> 00:41:22,760 Speaker 7: one piece of advice would be to get a really 811 00:41:22,800 --> 00:41:24,520 Speaker 7: healthy roommate who you knew how to help. 812 00:41:28,120 --> 00:41:29,680 Speaker 1: You didn't cause a lot of stress here. People are 813 00:41:29,680 --> 00:41:32,880 Speaker 1: gonna blame their diarrhea on their roommates. Now, if you 814 00:41:33,000 --> 00:41:39,160 Speaker 1: only did the dishes, then I wouldn't have diarrhea. 815 00:41:37,480 --> 00:41:39,600 Speaker 3: Or maybe you cleaned the bathroom too much. I needed 816 00:41:39,600 --> 00:41:42,440 Speaker 3: your good microbes submand at them for that. So I've 817 00:41:42,440 --> 00:41:46,640 Speaker 3: got a question about how we even quantify microbiome. So bacteria, 818 00:41:47,120 --> 00:41:49,640 Speaker 3: you know, they can undergo conjugation, so they swap genetic 819 00:41:49,680 --> 00:41:51,840 Speaker 3: material with each other. In just the course of a 820 00:41:51,880 --> 00:41:54,520 Speaker 3: couple of years, viruses are becoming new species because they're 821 00:41:54,600 --> 00:41:59,080 Speaker 3: mutating so much. How do you define a species when 822 00:41:59,080 --> 00:42:01,280 Speaker 3: things are changing so quickly, and how do you compare 823 00:42:01,800 --> 00:42:04,719 Speaker 3: between individuals when there's all this variability. 824 00:42:05,880 --> 00:42:08,160 Speaker 7: Yeah, what a great question. And like I've been in 825 00:42:08,160 --> 00:42:10,600 Speaker 7: this field long enough that I've watched the pendulum swing 826 00:42:10,640 --> 00:42:13,440 Speaker 7: back and forth on how we make those definitions. Sometimes 827 00:42:13,440 --> 00:42:16,640 Speaker 7: it's driven a little bit by technology, but you know, 828 00:42:16,760 --> 00:42:21,160 Speaker 7: basically there have been people thinking about microbial communities for 829 00:42:21,760 --> 00:42:24,839 Speaker 7: more than a century. So it goes back to there 830 00:42:24,920 --> 00:42:29,120 Speaker 7: was a Ukrainian microbial ecologist who was studying pond scum 831 00:42:29,200 --> 00:42:32,640 Speaker 7: in Switzerland and he made these columns called Winnegradsky columns, 832 00:42:32,640 --> 00:42:34,680 Speaker 7: which had you know, just what I was talking about 833 00:42:34,680 --> 00:42:38,720 Speaker 7: with the oxygen gradients, where you'd have oxygen loving bugs 834 00:42:38,719 --> 00:42:41,440 Speaker 7: at the top and then their waste products become the 835 00:42:41,480 --> 00:42:44,200 Speaker 7: treasure of the next layer of microbes which need less 836 00:42:44,200 --> 00:42:49,760 Speaker 7: oxygen and have different strategies for metabolism. So those layers 837 00:42:49,800 --> 00:42:52,600 Speaker 7: of microbes, you could even consider them to be the 838 00:42:52,719 --> 00:42:55,560 Speaker 7: unit of selection that matters, and so it could be 839 00:42:55,600 --> 00:43:00,600 Speaker 7: defined functionally. Almost since the mid twentieth century started having 840 00:43:00,640 --> 00:43:04,520 Speaker 7: molecular techniques for probing all of the microbes in a community, 841 00:43:04,520 --> 00:43:07,720 Speaker 7: and this all started with environmental microbiologists. All the human 842 00:43:07,800 --> 00:43:11,120 Speaker 7: clinical microbiology people were too busy isolating one pathogen at 843 00:43:11,160 --> 00:43:13,960 Speaker 7: a time and throwing anything that they didn't define as 844 00:43:13,960 --> 00:43:17,440 Speaker 7: a pathogen down the drain as like unrelevant normal flora 845 00:43:17,520 --> 00:43:20,719 Speaker 7: or something like that. So the environmental microbiologists got really 846 00:43:20,760 --> 00:43:25,600 Speaker 7: good at these really cool molecular techniques, starting with less resolution, 847 00:43:25,960 --> 00:43:28,839 Speaker 7: so they had to define a species based on the 848 00:43:28,840 --> 00:43:32,720 Speaker 7: information they could get. So we started like digesting common 849 00:43:32,800 --> 00:43:37,960 Speaker 7: genes like ribosomal genes, and using restriction enzymes that we 850 00:43:38,040 --> 00:43:41,440 Speaker 7: got out of hot springs and putting them on gels, 851 00:43:41,480 --> 00:43:44,240 Speaker 7: and then like if the bands on the gel looked different, 852 00:43:44,280 --> 00:43:46,600 Speaker 7: then that would be defined as a different species. So 853 00:43:46,719 --> 00:43:50,560 Speaker 7: probably we're talking like a few percent difference in genome 854 00:43:50,600 --> 00:43:53,080 Speaker 7: because we were only looking at one gene. Even if 855 00:43:53,080 --> 00:43:55,480 Speaker 7: that one gene is exactly the same, there could still 856 00:43:55,520 --> 00:43:59,360 Speaker 7: be millions of years of evolution separating those two organisms. 857 00:44:00,120 --> 00:44:03,160 Speaker 7: Then we got much better. Now we can sequence everything. 858 00:44:03,640 --> 00:44:06,520 Speaker 7: And so when I first started in this field around 859 00:44:06,560 --> 00:44:09,680 Speaker 7: two thousand and eight or so, we defined a bacterial 860 00:44:09,719 --> 00:44:13,560 Speaker 7: species as being three percent different from the next in 861 00:44:13,600 --> 00:44:16,760 Speaker 7: this one ribosomal gene. And that was how we defined 862 00:44:16,960 --> 00:44:20,279 Speaker 7: a species. Since then, as our techniques have gotten better, 863 00:44:20,360 --> 00:44:25,240 Speaker 7: we've leaned towards using even tighter definitions. So we could, 864 00:44:25,920 --> 00:44:29,000 Speaker 7: you know, look at organisms that are almost identical and 865 00:44:29,040 --> 00:44:31,319 Speaker 7: only have one nuclear hide difference, and then we would 866 00:44:31,360 --> 00:44:35,880 Speaker 7: start to define that as the taxonomic unit that mattered. 867 00:44:36,120 --> 00:44:38,560 Speaker 1: Because these guys reproduce asexually. 868 00:44:38,040 --> 00:44:41,319 Speaker 7: Right, yeah, they reproduce asexually, but they have pretty high 869 00:44:41,400 --> 00:44:44,120 Speaker 7: mutation rates. They don't like correct all their mistakes. So 870 00:44:44,960 --> 00:44:48,360 Speaker 7: you know, for a virus, every progeny is immutant basically, 871 00:44:51,160 --> 00:44:53,400 Speaker 7: I mean, think about that for flu or covid, Like 872 00:44:53,480 --> 00:44:56,040 Speaker 7: I think there were actually really great visualizations about that 873 00:44:56,520 --> 00:45:00,759 Speaker 7: since the pandemic that helped that become obvious to everybody. 874 00:45:00,880 --> 00:45:03,360 Speaker 7: Which is so interesting, Right, if every time a virus 875 00:45:03,840 --> 00:45:06,080 Speaker 7: makes a copy, it's a new mutant. Some of those 876 00:45:06,160 --> 00:45:09,080 Speaker 7: just fall flat, But that's not the strategy. The strategy is, 877 00:45:09,120 --> 00:45:11,799 Speaker 7: like most of them do okay, some of them do amazing. 878 00:45:12,360 --> 00:45:14,960 Speaker 1: Well, hey, look, I'm sure those virus parents love all 879 00:45:14,960 --> 00:45:17,240 Speaker 1: their little mutants. 880 00:45:17,400 --> 00:45:19,560 Speaker 3: All right, So let's take a break and think about 881 00:45:19,680 --> 00:45:22,120 Speaker 3: the mutants in our life that we love, and when 882 00:45:22,160 --> 00:45:27,000 Speaker 3: we come back, we'll talk more about the microbiome. 883 00:45:43,520 --> 00:45:45,920 Speaker 1: All right. So we're back, and we're talking to Professor 884 00:45:46,000 --> 00:45:49,160 Speaker 1: Katrino Whitson of the Whites and Research Institute about the 885 00:45:49,239 --> 00:45:52,680 Speaker 1: microbes in our body, how they influence our world and 886 00:45:52,719 --> 00:45:55,320 Speaker 1: shape our lives. And we're talking about the links between 887 00:45:55,400 --> 00:45:58,239 Speaker 1: microbiome and health. And in a minute, I want to 888 00:45:58,280 --> 00:46:01,239 Speaker 1: ask you about what we can do to packed our microbiome. 889 00:46:01,560 --> 00:46:03,359 Speaker 1: But you sort of laid out this picture that like 890 00:46:03,600 --> 00:46:05,839 Speaker 1: these things are in our guts. We don't really understand 891 00:46:06,120 --> 00:46:08,160 Speaker 1: why they're so different from person to person. We can't 892 00:46:08,200 --> 00:46:11,200 Speaker 1: even really define health. We don't understand necessarily what microbiome 893 00:46:11,239 --> 00:46:13,880 Speaker 1: you need to have healthy function. But we know that 894 00:46:13,920 --> 00:46:17,200 Speaker 1: there's a connection between microbiome and health, right, And I've 895 00:46:17,280 --> 00:46:20,480 Speaker 1: heard about people talk about connections between like the microbiome 896 00:46:20,520 --> 00:46:25,040 Speaker 1: and like Alzheimer's or microbiome and autism and microbiome and 897 00:46:25,080 --> 00:46:27,440 Speaker 1: all sorts of things in our lives. How much do 898 00:46:27,480 --> 00:46:30,840 Speaker 1: we know about the impact of the microbiome on these. 899 00:46:30,640 --> 00:46:34,080 Speaker 3: Conditions, Can I super fast interject. I love that Katrina 900 00:46:34,320 --> 00:46:37,080 Speaker 3: is president of the Whites and Institute, but I do 901 00:46:37,080 --> 00:46:40,000 Speaker 3: feel like we've never actually mentioned that Katrina is also 902 00:46:40,040 --> 00:46:42,680 Speaker 3: a professor at UC Irvine and has her own lab. 903 00:46:42,840 --> 00:46:46,279 Speaker 3: Have we given her actual credentials at some point? 904 00:46:46,560 --> 00:46:48,840 Speaker 1: She does have a secondary affiliation that you see Irvine. 905 00:46:49,719 --> 00:46:52,680 Speaker 3: Okay, all right, so she is incredible in lots of ways. 906 00:46:52,719 --> 00:46:54,320 Speaker 3: But okay, all right, sorry, go ahead with the question. 907 00:46:55,320 --> 00:46:58,960 Speaker 7: That's nice of you. Well, I mean, yes, we have 908 00:46:59,239 --> 00:47:04,799 Speaker 7: observation evidence associating microbiomes with health on a lot of 909 00:47:04,800 --> 00:47:06,960 Speaker 7: different fronts, and I mean just it's hard to even 910 00:47:07,040 --> 00:47:08,719 Speaker 7: know where to start. But one place I could start 911 00:47:08,840 --> 00:47:10,760 Speaker 7: is that when I started my lab at EC Irvine 912 00:47:10,800 --> 00:47:14,799 Speaker 7: in twenty fourteen, right when microbiome was becoming big in 913 00:47:14,800 --> 00:47:17,560 Speaker 7: the literature and everybody was excited about it, I had 914 00:47:17,640 --> 00:47:20,960 Speaker 7: one hundred labs contact me wanting to collaborate. In that 915 00:47:21,000 --> 00:47:23,279 Speaker 7: first year, I think I had one grad student just 916 00:47:23,360 --> 00:47:25,440 Speaker 7: beginning to join my lab. We obviously couldn't do one 917 00:47:25,480 --> 00:47:28,640 Speaker 7: hundred collaborations, so I ended up joining forces with an 918 00:47:28,640 --> 00:47:32,080 Speaker 7: ecologist here, Jennifer Martini, and we started a Microbiomes center, 919 00:47:32,640 --> 00:47:34,680 Speaker 7: and in the last ten years I have gotten to 920 00:47:34,719 --> 00:47:39,080 Speaker 7: study easily one hundred different types of microbiomes. Like name 921 00:47:39,120 --> 00:47:41,359 Speaker 7: a type of body example you could think of, I've 922 00:47:41,400 --> 00:47:43,600 Speaker 7: probably got some in our lab freezer, and I've probably 923 00:47:43,600 --> 00:47:46,560 Speaker 7: studied it's microbiome. And that goes for like lots of 924 00:47:46,560 --> 00:47:50,520 Speaker 7: different kinds of creatures, including sharks that eat seaweed from 925 00:47:50,600 --> 00:47:54,280 Speaker 7: Donovan German's lab, for example. So we have been going 926 00:47:54,320 --> 00:47:57,960 Speaker 7: around and like watching what the microbiomes look like and 927 00:47:58,000 --> 00:48:01,319 Speaker 7: taking notes and associating that way health. So a lot 928 00:48:01,360 --> 00:48:04,240 Speaker 7: of the information we have is observational. So we still 929 00:48:04,280 --> 00:48:08,319 Speaker 7: have in the future a need to do more interventional 930 00:48:08,320 --> 00:48:11,239 Speaker 7: studies where we ask how does the microbiome change when 931 00:48:11,280 --> 00:48:13,799 Speaker 7: you manipulate it in a certain way. You know, now 932 00:48:13,800 --> 00:48:16,920 Speaker 7: we kind of know that microbiomes are associated with obesity 933 00:48:17,000 --> 00:48:19,560 Speaker 7: and cancer and so forth, But then what do we 934 00:48:19,600 --> 00:48:21,520 Speaker 7: do about it? That's kind of like the next ten 935 00:48:21,600 --> 00:48:24,400 Speaker 7: years of challenge. And there's a few glimmers of really 936 00:48:24,440 --> 00:48:28,440 Speaker 7: really exciting outcomes that make me think it's going to 937 00:48:28,440 --> 00:48:32,200 Speaker 7: be possible. So, like, for example, cancer treatment is an 938 00:48:32,280 --> 00:48:34,560 Speaker 7: area that I think has a lot of room for 939 00:48:35,080 --> 00:48:39,720 Speaker 7: big improvement where my colleagues at m D Anderson gen Wargo, 940 00:48:39,800 --> 00:48:43,680 Speaker 7: for example, have done studies showing that when melanoma patients 941 00:48:43,719 --> 00:48:47,360 Speaker 7: are getting immunotherapy, which usually only succeeds about thirty percent 942 00:48:47,360 --> 00:48:49,439 Speaker 7: of the time, and the thirty percent of people who 943 00:48:49,480 --> 00:48:52,040 Speaker 7: have a successful immune therapy tend to have a certain 944 00:48:52,120 --> 00:48:54,920 Speaker 7: kind of microbiome. Well, it turns out if you do 945 00:48:54,960 --> 00:48:58,960 Speaker 7: a fecal transplant from someone who's immunotherapy succeeded into someone 946 00:48:59,000 --> 00:49:03,520 Speaker 7: who's immunotherapy failed, you increase their chances of a good outcome. 947 00:49:04,120 --> 00:49:06,920 Speaker 7: Or if you ask how much fiber people ate, people 948 00:49:06,960 --> 00:49:09,239 Speaker 7: who ate more than twenty grams of fiber per day 949 00:49:09,600 --> 00:49:13,560 Speaker 7: have double the progress free survival when they're doing immunotherapy. 950 00:49:13,680 --> 00:49:16,160 Speaker 7: And now they're even doing intervention studies where they're getting 951 00:49:16,160 --> 00:49:19,840 Speaker 7: people on immunotherapy to eat fiber and they're watching to 952 00:49:19,880 --> 00:49:23,239 Speaker 7: see if that increases their healthy outcomes. And that's not 953 00:49:23,280 --> 00:49:27,319 Speaker 7: published yet, but I'm very optimistic. So those are the 954 00:49:27,440 --> 00:49:29,640 Speaker 7: kinds of things I could see happening in the future. 955 00:49:29,680 --> 00:49:32,920 Speaker 7: We even know that vaccine efficacy depends on fiber intake, 956 00:49:33,040 --> 00:49:34,880 Speaker 7: so like if you want to have a good response 957 00:49:34,920 --> 00:49:38,520 Speaker 7: to a vaccine, eating well and Having enough plant fiber 958 00:49:38,560 --> 00:49:41,000 Speaker 7: to support your gut microbes and keep your immune system 959 00:49:41,040 --> 00:49:44,360 Speaker 7: going will actually make you have a more robust response 960 00:49:44,400 --> 00:49:45,400 Speaker 7: to a vaccine. 961 00:49:45,840 --> 00:49:47,960 Speaker 1: See. I knew tacos are good for you. I always 962 00:49:48,000 --> 00:49:49,280 Speaker 1: knew that tacos. 963 00:49:49,280 --> 00:49:51,600 Speaker 3: Exactly what are you putting in your tacos? Why are 964 00:49:51,600 --> 00:49:55,399 Speaker 3: your tacos high fiber? Oh? Oh, I see not all 965 00:49:55,440 --> 00:49:57,160 Speaker 3: tacos have beans in them, Daniel. 966 00:49:57,480 --> 00:50:00,600 Speaker 1: Real tacos. Are you having like weird virgin the tacos 967 00:50:00,600 --> 00:50:01,120 Speaker 1: with beans? 968 00:50:01,320 --> 00:50:01,600 Speaker 3: I guess? 969 00:50:01,600 --> 00:50:05,800 Speaker 7: So, yeah, I guess even Texans put beans in their chili. 970 00:50:06,320 --> 00:50:09,120 Speaker 1: Yeah, no, exactly no, No, Texans have no beans in 971 00:50:09,120 --> 00:50:10,560 Speaker 1: their chili. That's very important contrining. 972 00:50:11,800 --> 00:50:13,040 Speaker 7: Okay, well, all. 973 00:50:13,080 --> 00:50:15,359 Speaker 1: Right, So you've mentioned a few ways that we can 974 00:50:15,400 --> 00:50:18,319 Speaker 1: impact our microbiome. Let's dig into those in detail. So 975 00:50:18,400 --> 00:50:21,000 Speaker 1: you've talked a couple of times about fecal transplants, and 976 00:50:21,040 --> 00:50:23,480 Speaker 1: people are probably wondering, like, what are you talking about here? 977 00:50:23,520 --> 00:50:25,680 Speaker 1: When I think about transplant, I think about taking a 978 00:50:25,760 --> 00:50:27,640 Speaker 1: kidney out of one person's body and putting it in 979 00:50:27,680 --> 00:50:30,239 Speaker 1: somebody else's body. Now I'm trying to think about what 980 00:50:30,280 --> 00:50:33,040 Speaker 1: a fecal transplant means. Like, walk us through this what's 981 00:50:33,040 --> 00:50:35,080 Speaker 1: going on here? How does this work at all? What 982 00:50:35,120 --> 00:50:35,839 Speaker 1: do we know about it? 983 00:50:36,600 --> 00:50:42,120 Speaker 7: Okay, well, fecal transplants refer to taking a healthy microbiome 984 00:50:42,160 --> 00:50:44,560 Speaker 7: from one person and trying to give it to another person. 985 00:50:45,120 --> 00:50:48,160 Speaker 7: We have been doing this since ancient times, so more 986 00:50:48,200 --> 00:50:50,760 Speaker 7: than a thousand years ago in China, people were using 987 00:50:50,760 --> 00:50:56,960 Speaker 7: what they call golden soup to treat diarrhea. And actually, 988 00:50:57,040 --> 00:50:59,360 Speaker 7: since I teach about this in my big classes, and 989 00:50:59,400 --> 00:51:01,920 Speaker 7: I've heard so many good stories from my students who 990 00:51:02,000 --> 00:51:04,480 Speaker 7: bring up, Oh, yeah, my family's from the South and 991 00:51:04,520 --> 00:51:09,040 Speaker 7: we used to do cow Patty's tea to treat diarrhea. 992 00:51:09,080 --> 00:51:12,680 Speaker 1: What really, Yeah, Southern hospitality there you go. 993 00:51:12,800 --> 00:51:14,160 Speaker 3: Yeah, you guys have a lot to look forward to 994 00:51:14,239 --> 00:51:15,000 Speaker 3: when you come to visit. 995 00:51:17,560 --> 00:51:19,680 Speaker 7: I mean, this is something you would only do when 996 00:51:19,680 --> 00:51:21,920 Speaker 7: you're in dire streets, right, But if you've been having 997 00:51:21,960 --> 00:51:24,760 Speaker 7: diarrhea and you weigh sixty five pounds and you can't walk, 998 00:51:25,200 --> 00:51:27,960 Speaker 7: you might be up for trying something bizarre to survive, 999 00:51:28,080 --> 00:51:31,480 Speaker 7: you know. And so actually, a modern time story comes 1000 00:51:31,560 --> 00:51:34,960 Speaker 7: from the Mayo Clinic in Minnesota, where a woman who 1001 00:51:35,040 --> 00:51:37,600 Speaker 7: had a sea diff infection. Sea diff is typically caused 1002 00:51:37,640 --> 00:51:41,319 Speaker 7: by taking antibiotics and decimating your healthy microbiome, which makes 1003 00:51:41,360 --> 00:51:44,439 Speaker 7: it easy for sea diff which forms spores in your gut, 1004 00:51:44,480 --> 00:51:47,560 Speaker 7: to rear its head and make toxins and cause diarrhea, 1005 00:51:48,040 --> 00:51:51,080 Speaker 7: and it can get really recurrent and difficult to treat. 1006 00:51:51,160 --> 00:51:54,439 Speaker 7: And the standard of care, ironically is more antibiotics, which 1007 00:51:54,480 --> 00:51:57,400 Speaker 7: caused the problem in the first place. So a woman 1008 00:51:57,640 --> 00:52:01,400 Speaker 7: at the University of Minnesota at the Mayo, her doctor 1009 00:52:01,440 --> 00:52:04,640 Speaker 7: had this, you know, kind of crazy idea like let's 1010 00:52:04,760 --> 00:52:07,920 Speaker 7: take a fecal sample from her husband and transplant it 1011 00:52:07,960 --> 00:52:10,759 Speaker 7: into her and see if we can help this situation 1012 00:52:10,920 --> 00:52:14,359 Speaker 7: get better, And her symptoms improved. Within a day. She 1013 00:52:14,440 --> 00:52:17,120 Speaker 7: went from having had diarrhea every fifteen minutes and she 1014 00:52:17,200 --> 00:52:20,000 Speaker 7: was in a wheelchair and was like unlikely to survive 1015 00:52:20,920 --> 00:52:23,400 Speaker 7: to the next day her diarrhea was resolved. 1016 00:52:23,560 --> 00:52:24,360 Speaker 3: It's incredible. 1017 00:52:24,680 --> 00:52:27,320 Speaker 1: I think you're skipping over some of the crucial steps involved, 1018 00:52:27,320 --> 00:52:29,360 Speaker 1: Like when you talk about this fecal transplant, are we 1019 00:52:29,360 --> 00:52:31,560 Speaker 1: talking about the northern route the southern route, Like how 1020 00:52:31,600 --> 00:52:33,279 Speaker 1: do you get it from him into her? 1021 00:52:33,640 --> 00:52:36,120 Speaker 7: Yes, good question. You've heard me say my northern and 1022 00:52:36,160 --> 00:52:40,239 Speaker 7: southern route joke. Well, I mean your digestive tract is 1023 00:52:40,280 --> 00:52:42,720 Speaker 7: a tube, so you have a couple of entry points. 1024 00:52:44,600 --> 00:52:45,799 Speaker 1: She's so polite for me. 1025 00:52:47,239 --> 00:52:50,919 Speaker 7: And so to do a fecal transplant, you can take 1026 00:52:50,960 --> 00:52:54,040 Speaker 7: a healthy sample, put it in the blender and then 1027 00:52:54,320 --> 00:52:58,160 Speaker 7: get it into a nasal gastric tube down into your 1028 00:52:58,520 --> 00:53:01,880 Speaker 7: stomach from the northern route, or you can do it 1029 00:53:01,920 --> 00:53:05,560 Speaker 7: more like an enema into the bottom part of your 1030 00:53:05,560 --> 00:53:09,719 Speaker 7: digestive tract. You can also make capsules, and you would 1031 00:53:09,800 --> 00:53:12,920 Speaker 7: need to swallow about twenty or thirty glisterin capsules that 1032 00:53:13,000 --> 00:53:16,280 Speaker 7: have poop in them to have an impact, which reminds 1033 00:53:16,360 --> 00:53:19,320 Speaker 7: me of a favorite story. Stanley Falco at Stanford in 1034 00:53:19,360 --> 00:53:23,120 Speaker 7: the nineteen fifties was a hospital technician as a young man, 1035 00:53:23,160 --> 00:53:25,400 Speaker 7: he's now like he was one of the fathers of 1036 00:53:25,440 --> 00:53:27,680 Speaker 7: the hygiene hypothesis, But as a young man he was 1037 00:53:27,719 --> 00:53:31,200 Speaker 7: helping a surgeon who had this idea that they could 1038 00:53:31,320 --> 00:53:35,240 Speaker 7: hide healthy fecal samples from before a patient had surgery 1039 00:53:35,360 --> 00:53:37,800 Speaker 7: in their ice cream and they could eat that post 1040 00:53:37,800 --> 00:53:39,600 Speaker 7: operatively as they were waking up, because a lot of 1041 00:53:39,640 --> 00:53:42,040 Speaker 7: people were getting diarrhea from the antibiotics they were getting 1042 00:53:42,040 --> 00:53:46,399 Speaker 7: in the surgical ward, and without telling them, they had 1043 00:53:46,480 --> 00:53:50,440 Speaker 7: them eat ice cream with these fecal glisterin caps in there, 1044 00:53:51,200 --> 00:53:53,920 Speaker 7: and it was working great, like nobody was getting diarrhea. 1045 00:53:54,120 --> 00:53:56,080 Speaker 7: But when the director of the hospital found out, he 1046 00:53:56,120 --> 00:53:56,680 Speaker 7: fired them. 1047 00:53:58,000 --> 00:54:01,600 Speaker 1: Yeah yeah, no more Brownie Chunk ice cream. 1048 00:54:03,280 --> 00:54:06,719 Speaker 7: But they've all recovered and that thinking got them really far. 1049 00:54:06,840 --> 00:54:08,719 Speaker 7: So that was actually very ahead of their time to 1050 00:54:08,719 --> 00:54:10,440 Speaker 7: be doing that in the nineteen fifties. But then it 1051 00:54:10,480 --> 00:54:13,560 Speaker 7: was around twenty ten or so that this story in 1052 00:54:13,600 --> 00:54:17,360 Speaker 7: Minnesota I told you about emerged, and then since then 1053 00:54:18,080 --> 00:54:21,680 Speaker 7: it's become like really a sought after treatment for sea 1054 00:54:21,680 --> 00:54:24,120 Speaker 7: diff but very hard to regulate. It's kind of similar 1055 00:54:24,160 --> 00:54:26,480 Speaker 7: to blood donation, like we haven't figured out how to 1056 00:54:26,480 --> 00:54:30,160 Speaker 7: make synthetic blood and it's still a quest, and similarly 1057 00:54:30,200 --> 00:54:32,880 Speaker 7: for fecal material, it's a quest to figure out like 1058 00:54:32,920 --> 00:54:34,920 Speaker 7: what is even in there, which parts of it are 1059 00:54:34,960 --> 00:54:37,160 Speaker 7: needed to make a fecal transplant successful. 1060 00:54:37,560 --> 00:54:40,360 Speaker 1: So what's happening is that, like my microbiome is devastated, 1061 00:54:40,360 --> 00:54:42,600 Speaker 1: which is why I have Diarrhea'm getting somebody else's community 1062 00:54:42,600 --> 00:54:45,719 Speaker 1: that comes in and then grows into some healthy community. 1063 00:54:45,719 --> 00:54:46,280 Speaker 1: That's the idea. 1064 00:54:47,120 --> 00:54:49,880 Speaker 7: Well, that might have been initial thoughts on what the 1065 00:54:49,920 --> 00:54:53,839 Speaker 7: idea was, but interestingly in the last fifteen years, we've 1066 00:54:53,880 --> 00:54:57,279 Speaker 7: tried dissecting the poop into its various components, and so 1067 00:54:57,520 --> 00:55:01,280 Speaker 7: fascinatingly we've discovered that many of the components are enough 1068 00:55:01,440 --> 00:55:04,000 Speaker 7: to work as a fecal transplant. So you can filter 1069 00:55:04,080 --> 00:55:07,480 Speaker 7: the poop and only give the liquid supernatan, which has 1070 00:55:07,560 --> 00:55:11,560 Speaker 7: molecules and maybe viruses, but certainly not bacterial cells, and 1071 00:55:11,600 --> 00:55:15,759 Speaker 7: that's enough to cause a successful so called fecal transplant. 1072 00:55:15,760 --> 00:55:19,120 Speaker 7: We call it a filtered fecal transplant, and that still works. 1073 00:55:19,960 --> 00:55:23,680 Speaker 7: Or you can just isolate the spores out those are 1074 00:55:23,760 --> 00:55:26,920 Speaker 7: cells for sure, and give that as a treatment. That's 1075 00:55:26,960 --> 00:55:30,480 Speaker 7: the FDA approved treatment for the product v OUST, or 1076 00:55:30,840 --> 00:55:33,920 Speaker 7: you can take a whole fecal community. There's a Swedish 1077 00:55:33,920 --> 00:55:37,200 Speaker 7: poop from the nineteen nineties that has been cultivated anaerobically 1078 00:55:37,280 --> 00:55:38,080 Speaker 7: ever since then. 1079 00:55:39,440 --> 00:55:39,720 Speaker 6: Poop. 1080 00:55:40,120 --> 00:55:42,160 Speaker 7: Yes, and my students are like, hey, that poop is 1081 00:55:42,160 --> 00:55:42,640 Speaker 7: older than me. 1082 00:55:46,320 --> 00:55:48,319 Speaker 1: Whenever I use the bath though, I never imagine it's 1083 00:55:48,360 --> 00:55:50,399 Speaker 1: going to go down in history, but this one really did. 1084 00:55:50,560 --> 00:55:53,760 Speaker 7: Yeah, this one poop has saved like probably thousands of lives. 1085 00:55:53,760 --> 00:55:57,800 Speaker 7: This one poop has been cultivated anaerobically for many years, 1086 00:55:57,880 --> 00:56:02,040 Speaker 7: and so presumably none of the initial molecules from that 1087 00:56:02,120 --> 00:56:04,839 Speaker 7: poop are present, but just the progeny of all those 1088 00:56:04,880 --> 00:56:09,200 Speaker 7: generations of microbial growth, and that has been enough to 1089 00:56:09,280 --> 00:56:13,600 Speaker 7: cure seedff in many, many different people. So, to be honest, 1090 00:56:13,640 --> 00:56:16,160 Speaker 7: it's still a science question, like what you actually need 1091 00:56:16,360 --> 00:56:18,960 Speaker 7: to make a fecal transplant work. There also have been 1092 00:56:19,040 --> 00:56:24,200 Speaker 7: famous failures. There were phase three clinical trials of cocktails 1093 00:56:24,200 --> 00:56:27,560 Speaker 7: of microbes that people put together in the pharmaceutical industry 1094 00:56:27,640 --> 00:56:30,560 Speaker 7: thinking that that would work, and it didn't. So there's 1095 00:56:30,600 --> 00:56:34,360 Speaker 7: a geni sequax about the poop that just works perfect. 1096 00:56:34,640 --> 00:56:37,200 Speaker 3: So you mentioned that when you've got the liquid supernatan 1097 00:56:37,280 --> 00:56:39,520 Speaker 3: without any of the bacteria in it, but you've got 1098 00:56:39,560 --> 00:56:44,799 Speaker 3: their metabolic excretions plus viruses, it works fine. 1099 00:56:44,960 --> 00:56:45,200 Speaker 7: Yeah. 1100 00:56:45,239 --> 00:56:47,760 Speaker 3: Does that suggest it's the viruses that actually matter? 1101 00:56:48,280 --> 00:56:51,400 Speaker 7: What a cool question. I love that question. I don't 1102 00:56:51,440 --> 00:56:53,520 Speaker 7: know the answer, but it has been shown in like 1103 00:56:53,600 --> 00:56:55,600 Speaker 7: a number of different ways. There was a group in 1104 00:56:55,640 --> 00:56:59,040 Speaker 7: Germany and Kiel that showed this with the viruses with 1105 00:56:59,080 --> 00:57:02,040 Speaker 7: the filtered fecal filtrate. And then there's a group at 1106 00:57:02,040 --> 00:57:05,360 Speaker 7: the University of Copenhagen who have done really extensive studies 1107 00:57:05,400 --> 00:57:08,680 Speaker 7: in this really cool model of baby piglets, and their 1108 00:57:08,760 --> 00:57:11,520 Speaker 7: goal is to be able to help preterm infants in 1109 00:57:11,560 --> 00:57:13,600 Speaker 7: the NICKEU. And it's such a good idea because it 1110 00:57:13,600 --> 00:57:17,120 Speaker 7: would be very dangerous to give live microbes to pre 1111 00:57:17,240 --> 00:57:20,200 Speaker 7: term babies whose guts are in really bad shape. But 1112 00:57:20,440 --> 00:57:22,720 Speaker 7: if you could do it with the viruses, you might 1113 00:57:22,760 --> 00:57:25,840 Speaker 7: be able to create an environment that helps the gut 1114 00:57:25,880 --> 00:57:29,360 Speaker 7: microbiome develop successfully. And like babies in the nick you 1115 00:57:29,600 --> 00:57:32,000 Speaker 7: have really bad outcomes with their guts, like a third 1116 00:57:32,080 --> 00:57:35,640 Speaker 7: become septic, a third get necrotizing enterocolitis, and a third 1117 00:57:35,720 --> 00:57:38,360 Speaker 7: have what they call healthy outcomes, but I mean they're 1118 00:57:38,360 --> 00:57:41,440 Speaker 7: really in dire straits. And so I love what the 1119 00:57:41,480 --> 00:57:43,680 Speaker 7: group at the University of Copenhagen is doing because they're 1120 00:57:43,680 --> 00:57:46,200 Speaker 7: starting in a model of baby piglets, which is pretty 1121 00:57:46,200 --> 00:57:49,720 Speaker 7: similar to a human model, and I am optimistic that 1122 00:57:49,800 --> 00:57:52,760 Speaker 7: it won't take too long before they'll feel like it's 1123 00:57:52,800 --> 00:57:55,040 Speaker 7: safe to try it in babies because the room for 1124 00:57:55,080 --> 00:57:57,920 Speaker 7: improvement there is just enormous. So that to me is 1125 00:57:57,960 --> 00:58:01,200 Speaker 7: like a really really cool way that we could improve health. 1126 00:58:01,760 --> 00:58:03,560 Speaker 1: So if you get a transplant from somebody else they 1127 00:58:03,560 --> 00:58:06,120 Speaker 1: have a different microbiome, it's no guarantee that it's definitely 1128 00:58:06,120 --> 00:58:09,080 Speaker 1: going to work for you? Is the ideal transplant a 1129 00:58:09,120 --> 00:58:12,280 Speaker 1: donation from yourself, Like, if you're out there having good 1130 00:58:12,360 --> 00:58:14,480 Speaker 1: poops every day, should people put some of that in 1131 00:58:14,480 --> 00:58:17,480 Speaker 1: the freezer for the day when they have surgery or diarrhea. 1132 00:58:18,120 --> 00:58:20,840 Speaker 7: I really like that idea. It's certainly been a topic 1133 00:58:20,920 --> 00:58:22,360 Speaker 7: of conversation in our household. 1134 00:58:23,840 --> 00:58:26,280 Speaker 1: Don't dig around in our freezer unless you want some surprises. 1135 00:58:26,320 --> 00:58:29,120 Speaker 13: By the way, well, not your favorite part of our freezer, 1136 00:58:29,160 --> 00:58:34,720 Speaker 13: I know, but I appreciate your open mindedness. And by 1137 00:58:34,760 --> 00:58:37,360 Speaker 13: the way, when my students have to put vehicle samples 1138 00:58:37,360 --> 00:58:39,720 Speaker 13: in the freezer for our studies, we joke about like 1139 00:58:39,880 --> 00:58:41,480 Speaker 13: the right way to do that, and like, if your 1140 00:58:41,560 --> 00:58:44,360 Speaker 13: roommates don't like the idea, just empty out a box 1141 00:58:44,360 --> 00:58:46,960 Speaker 13: of strawberry popsicles or like chicken nuggets and you could 1142 00:58:46,960 --> 00:58:48,560 Speaker 13: just hide your samples in there. And if they're trying 1143 00:58:48,600 --> 00:58:50,680 Speaker 13: to steal a popsicle, I mean, that's on them. 1144 00:58:52,840 --> 00:58:54,640 Speaker 1: Oh they're going to get a popsicle. It's not going 1145 00:58:54,640 --> 00:58:56,080 Speaker 1: to be strawberry exactly. 1146 00:58:56,880 --> 00:58:59,080 Speaker 3: After this conversation, I'm never going to look at popsicles 1147 00:58:59,080 --> 00:59:04,200 Speaker 3: again say yeah. 1148 00:59:03,560 --> 00:59:07,200 Speaker 7: Yeah, So the question was could we do like auto 1149 00:59:07,240 --> 00:59:09,920 Speaker 7: like self fecal transplants and have that work. And that 1150 00:59:09,960 --> 00:59:12,440 Speaker 7: has been studied in a lot of different contexts also, 1151 00:59:12,520 --> 00:59:15,600 Speaker 7: for like recovery from antibiotics. If you really know that 1152 00:59:15,640 --> 00:59:19,000 Speaker 7: you're healthy, Like maybe everybody should be banking their own 1153 00:59:19,040 --> 00:59:21,280 Speaker 7: sample at some point in their life when they just 1154 00:59:21,320 --> 00:59:24,400 Speaker 7: were digesting really well and they were eighteen and had 1155 00:59:24,440 --> 00:59:26,560 Speaker 7: like been eating really well for the summer or something, 1156 00:59:26,800 --> 00:59:29,400 Speaker 7: save a moment of that glorious part of your health 1157 00:59:29,400 --> 00:59:31,480 Speaker 7: in the freezer so you could restore yourself to it. 1158 00:59:32,240 --> 00:59:35,560 Speaker 7: I like that idea. I've proposed this for different kinds 1159 00:59:35,560 --> 00:59:38,480 Speaker 7: of context. Like one time I wrote a proposal about 1160 00:59:38,760 --> 00:59:41,600 Speaker 7: helping people who are going to have to have radiotherapy 1161 00:59:41,720 --> 00:59:46,000 Speaker 7: for cancer. And often people get essentially diarrhea and other 1162 00:59:46,080 --> 00:59:50,080 Speaker 7: really rough consequences of the radiation treatment. So the idea 1163 00:59:50,160 --> 00:59:52,520 Speaker 7: was to restore their health to what they were before 1164 00:59:52,560 --> 00:59:56,360 Speaker 7: the treatment. But somebody who has cancer might have cancer 1165 00:59:56,400 --> 00:59:59,840 Speaker 7: promoting properties in their own fecal microbiomes, so you could 1166 01:00:00,000 --> 01:00:04,160 Speaker 7: certainly bring them back to getting cancer again. I mean 1167 01:00:04,160 --> 01:00:07,040 Speaker 7: this has been studied extensively, Like this kind of approach 1168 01:00:07,080 --> 01:00:09,720 Speaker 7: has been used. There was a big study in New 1169 01:00:09,800 --> 01:00:13,120 Speaker 7: York City of people who were getting bone marrow transplants 1170 01:00:13,120 --> 01:00:17,880 Speaker 7: for blood cancers, where they did transplants from people's before 1171 01:00:18,400 --> 01:00:21,160 Speaker 7: fecal sample in order to try to help them avoid 1172 01:00:21,200 --> 01:00:25,320 Speaker 7: getting I mean, people get terrible infections after getting cancer treatment. 1173 01:00:25,400 --> 01:00:27,280 Speaker 7: So this is an area again kind of like the 1174 01:00:27,320 --> 01:00:29,080 Speaker 7: preacher and babies. There's like a ton of room for 1175 01:00:29,160 --> 01:00:32,080 Speaker 7: improvement there. But the concern is that you would cause 1176 01:00:32,120 --> 01:00:36,200 Speaker 7: cancer again, so maybe a healthy donor is safer. And 1177 01:00:36,240 --> 01:00:38,080 Speaker 7: then I hear your question, well, what if the healthy 1178 01:00:38,080 --> 01:00:40,880 Speaker 7: donor is really different than you. Well, another thing that 1179 01:00:40,920 --> 01:00:43,920 Speaker 7: happens is it's rare that we follow up our studies 1180 01:00:43,920 --> 01:00:46,000 Speaker 7: long enough to really see what happens. But there was 1181 01:00:46,040 --> 01:00:49,880 Speaker 7: one study of autistic children where they did fecal transplants 1182 01:00:49,880 --> 01:00:52,880 Speaker 7: from a stranger, like a healthy donor, not a family member. 1183 01:00:52,960 --> 01:00:55,600 Speaker 7: But then they followed up for two years both the 1184 01:00:55,680 --> 01:00:58,880 Speaker 7: kids with autism and a healthy sibling in the same household. 1185 01:00:59,560 --> 01:01:02,000 Speaker 7: And I loved that they did this for two years. 1186 01:01:02,760 --> 01:01:06,920 Speaker 7: This is Rosy Krasmo like Brown at Arizona, and they 1187 01:01:07,000 --> 01:01:11,560 Speaker 7: found that at first the autistic children who received the 1188 01:01:11,600 --> 01:01:15,320 Speaker 7: fecal transplant from a stranger donor their guts were more 1189 01:01:15,360 --> 01:01:19,360 Speaker 7: similar to the healthy donor, but after two years their 1190 01:01:19,400 --> 01:01:22,920 Speaker 7: gut microbiomes resembled their siblings more, but they did have 1191 01:01:23,000 --> 01:01:26,880 Speaker 7: higher diversity. So it's almost like the fecal transplant kick 1192 01:01:26,960 --> 01:01:31,200 Speaker 7: started the capacity to carry a higher microbial diversity, But 1193 01:01:31,320 --> 01:01:34,880 Speaker 7: then all those strains got replaced by strains that were 1194 01:01:35,200 --> 01:01:39,960 Speaker 7: available in the household. So the household influence is really important, 1195 01:01:40,600 --> 01:01:43,240 Speaker 7: and it makes me wonder like when people get married, 1196 01:01:43,280 --> 01:01:45,400 Speaker 7: there's going to be a battle of the microbiotas and 1197 01:01:45,440 --> 01:01:48,000 Speaker 7: somebody's going to win, and that hasn't really been studied 1198 01:01:48,000 --> 01:01:48,439 Speaker 7: that much. 1199 01:01:48,840 --> 01:01:53,680 Speaker 1: You know, killed diarrhea do us part? Can we talk 1200 01:01:53,720 --> 01:01:57,160 Speaker 1: about the probiotic industry you mentioned earlier. It's eighty billion 1201 01:01:57,200 --> 01:01:59,760 Speaker 1: dollars and I feel like I see pills and powders 1202 01:01:59,800 --> 01:02:04,440 Speaker 1: and yogurts promoting probiotic this and probiotic that. What's in 1203 01:02:04,520 --> 01:02:07,240 Speaker 1: those And what's your take on whether they're likely to 1204 01:02:07,280 --> 01:02:07,800 Speaker 1: do anything? 1205 01:02:08,320 --> 01:02:10,640 Speaker 7: Well, that's a really big question. It is a really 1206 01:02:10,640 --> 01:02:13,440 Speaker 7: big industry. I was even just comparing the size of 1207 01:02:13,480 --> 01:02:16,880 Speaker 7: the probiotic industry in the antibiotic industry, and I think 1208 01:02:16,920 --> 01:02:20,080 Speaker 7: the probiotic industry might even be a bigger money maker 1209 01:02:20,080 --> 01:02:23,240 Speaker 7: than antibiotics, but it's close. But I mean that's amazing 1210 01:02:23,240 --> 01:02:26,200 Speaker 7: to me. Eighty billion dollars, like that's close to the 1211 01:02:26,240 --> 01:02:30,440 Speaker 7: GDP of many nations. And so whether it could work 1212 01:02:30,920 --> 01:02:34,240 Speaker 7: is one question. And yes, the idea of a probiotic 1213 01:02:34,320 --> 01:02:36,280 Speaker 7: makes sense. I mean, if you could get the right 1214 01:02:36,320 --> 01:02:38,840 Speaker 7: bug to the right place at the right time, that's 1215 01:02:38,840 --> 01:02:42,480 Speaker 7: a great idea. It could definitely work. When we say probiotic, 1216 01:02:42,520 --> 01:02:46,560 Speaker 7: that includes fermented foods like yogurt and kombucha and kiefer 1217 01:02:46,600 --> 01:02:50,880 Speaker 7: and miso, and those we actually can see really kickstart 1218 01:02:51,040 --> 01:02:54,280 Speaker 7: diversity in our guts. Not necessarily because the bacteria in 1219 01:02:54,360 --> 01:02:58,640 Speaker 7: those products are colonizing our gut, but they can kickstart 1220 01:02:58,720 --> 01:03:02,000 Speaker 7: diversity in a good way. Most people when they take 1221 01:03:02,040 --> 01:03:06,760 Speaker 7: a probiotic, and many packages claim that it's gonna directly 1222 01:03:06,960 --> 01:03:09,760 Speaker 7: increase your microbiome diversity. I think a lot of people 1223 01:03:09,800 --> 01:03:12,440 Speaker 7: when they eat a probiotic, imagine that now that bug 1224 01:03:12,520 --> 01:03:14,680 Speaker 7: is happily living in their gut and they just like 1225 01:03:14,920 --> 01:03:18,880 Speaker 7: got their community a little happier now. Most probiotics actually 1226 01:03:18,880 --> 01:03:21,680 Speaker 7: don't do that. Most are transient. So if you are 1227 01:03:21,800 --> 01:03:24,200 Speaker 7: taking those pills and then you measure people for a week, 1228 01:03:24,280 --> 01:03:26,320 Speaker 7: you'll see a wash out period and after a week 1229 01:03:26,440 --> 01:03:29,040 Speaker 7: or so it'll be gone, which is probably not what 1230 01:03:29,080 --> 01:03:32,880 Speaker 7: people imagine. You also might not want the probiotic to stick, 1231 01:03:33,120 --> 01:03:35,280 Speaker 7: so I always remember the story of a startup in 1232 01:03:35,320 --> 01:03:39,200 Speaker 7: San Francisco where they evolved probiotics that were good at 1233 01:03:39,200 --> 01:03:42,000 Speaker 7: binding to mucus, with the idea that they could persist 1234 01:03:42,040 --> 01:03:44,800 Speaker 7: in the gut. But they forgot about gum mucus and 1235 01:03:44,880 --> 01:03:48,240 Speaker 7: everybody got cavities in their little study. 1236 01:03:49,720 --> 01:03:53,600 Speaker 3: I'm not laugh is so complicated, I know. 1237 01:03:55,080 --> 01:03:58,880 Speaker 7: So on average probiotic packages, you know, they don't have 1238 01:03:59,000 --> 01:04:01,840 Speaker 7: to have evident for the claims they make on the packages, 1239 01:04:02,400 --> 01:04:05,960 Speaker 7: so they can say some pretty fantastical things. And actually, 1240 01:04:06,000 --> 01:04:10,000 Speaker 7: in my Microbiomes class this quarter, we had a probiotic 1241 01:04:10,280 --> 01:04:14,080 Speaker 7: sus score, like a suspicion score activity where everybody had 1242 01:04:14,120 --> 01:04:16,440 Speaker 7: to go find a probiotic with crazy claims on the 1243 01:04:16,480 --> 01:04:18,800 Speaker 7: package and then try to investigate the claims and like 1244 01:04:18,840 --> 01:04:21,840 Speaker 7: what evidence there was for them, and there was not 1245 01:04:21,960 --> 01:04:24,480 Speaker 7: usually a whole lot of evidence, And the students had 1246 01:04:24,560 --> 01:04:27,360 Speaker 7: amazing comments afterwards that were like, man, if I saw 1247 01:04:27,360 --> 01:04:30,200 Speaker 7: a celebrity claiming that a probiotic worked, I just would 1248 01:04:30,200 --> 01:04:32,840 Speaker 7: believe it. It never occurred to me to like investigate the evidence. 1249 01:04:32,880 --> 01:04:35,360 Speaker 7: And I'm like, you guys are science students. I'm glad 1250 01:04:35,400 --> 01:04:36,160 Speaker 7: if you're learning that. 1251 01:04:36,400 --> 01:04:37,440 Speaker 3: Yeah, it's important. 1252 01:04:38,280 --> 01:04:41,400 Speaker 7: Yeah. So you know, just off the top of my head, 1253 01:04:41,480 --> 01:04:44,200 Speaker 7: you know, there's probiotics out there that are named like 1254 01:04:44,320 --> 01:04:47,440 Speaker 7: happy hoo ha, and they claim to improve your imaginal 1255 01:04:47,560 --> 01:04:53,880 Speaker 7: micro or like you know, anyway, there's some pretty funny ones. 1256 01:04:54,040 --> 01:04:57,920 Speaker 7: But there are some probiotics that are well investigated and 1257 01:04:57,960 --> 01:05:00,560 Speaker 7: people are doing studies with them, and so sometimes they're 1258 01:05:00,600 --> 01:05:03,880 Speaker 7: not sharing the evidence in order to protect their ip. 1259 01:05:04,160 --> 01:05:07,680 Speaker 7: So it's complicated. But the way the industry is regulated 1260 01:05:07,840 --> 01:05:11,000 Speaker 7: is just that the probiotics have to be generally regarded 1261 01:05:11,040 --> 01:05:14,440 Speaker 7: as safe or grass, which is not a very high standard. 1262 01:05:14,480 --> 01:05:16,120 Speaker 7: I mean, it's a high standard in the sense that 1263 01:05:16,200 --> 01:05:17,840 Speaker 7: like this thing's not going to kill you, that's. 1264 01:05:17,680 --> 01:05:20,280 Speaker 3: Good, might give you cavities, might give. 1265 01:05:20,120 --> 01:05:22,880 Speaker 7: You cavities, or might just do absolutely nothing. And I 1266 01:05:22,920 --> 01:05:26,880 Speaker 7: mean the supplement industry, even beyond probiotics, is an enormous 1267 01:05:26,880 --> 01:05:30,840 Speaker 7: industry and there's very few claims and it's pretty hard 1268 01:05:30,840 --> 01:05:33,480 Speaker 7: to know. I mean, even for you know ourselves, like 1269 01:05:33,720 --> 01:05:35,840 Speaker 7: Daniel and I we have a son who's an athlete, 1270 01:05:35,920 --> 01:05:38,400 Speaker 7: and he's always, you know, really willing to do what 1271 01:05:38,480 --> 01:05:40,120 Speaker 7: it takes to be healthy. And so we've had a 1272 01:05:40,160 --> 01:05:43,360 Speaker 7: lot of conversations about what we understand about what's in 1273 01:05:43,400 --> 01:05:46,160 Speaker 7: a supplement versus what we understand about what's in a food. 1274 01:05:46,320 --> 01:05:48,920 Speaker 7: And you know, with the tools we have in our 1275 01:05:48,960 --> 01:05:52,440 Speaker 7: own households, we can't really assess the safety of food 1276 01:05:52,640 --> 01:05:57,600 Speaker 7: or supplements. That's why we need infrastructure and institutions that 1277 01:05:57,680 --> 01:05:59,840 Speaker 7: help us understand that. But a lot of the things 1278 01:05:59,880 --> 01:06:02,920 Speaker 7: that we can buy in packages might have stuff that's 1279 01:06:03,000 --> 01:06:05,360 Speaker 7: dangerous in them, and we have to be really careful. 1280 01:06:05,400 --> 01:06:10,120 Speaker 7: So my general instinct is to lean towards food, and 1281 01:06:11,160 --> 01:06:14,120 Speaker 7: you know the advice to generally not eat things that 1282 01:06:14,160 --> 01:06:16,800 Speaker 7: your grandparents wouldn't recognize as food, or maybe it has 1283 01:06:16,840 --> 01:06:19,920 Speaker 7: to be our great grandparents now, because a lot of 1284 01:06:19,960 --> 01:06:23,960 Speaker 7: the processed foods that are available to us these days, 1285 01:06:23,960 --> 01:06:27,240 Speaker 7: with tons of ingredients we can't even pronounce, it could 1286 01:06:27,280 --> 01:06:30,040 Speaker 7: be really damaging our health. It's not like I have 1287 01:06:30,120 --> 01:06:32,520 Speaker 7: really great evidence for every single one, but I think 1288 01:06:32,800 --> 01:06:37,040 Speaker 7: that leaning towards eating things that you can recognize tends 1289 01:06:37,080 --> 01:06:39,080 Speaker 7: to work the best for the evidence that we have 1290 01:06:39,200 --> 01:06:39,600 Speaker 7: right now. 1291 01:06:40,120 --> 01:06:43,360 Speaker 1: And earlier on you mentioned fiber and beans. Why is 1292 01:06:43,440 --> 01:06:45,200 Speaker 1: fiber something good to eat? I mean, if you're not 1293 01:06:45,200 --> 01:06:47,520 Speaker 1: going to do a poop transplant and you're not buying 1294 01:06:47,520 --> 01:06:49,920 Speaker 1: happy hooha or whatever, if you're just going to try 1295 01:06:49,960 --> 01:06:52,240 Speaker 1: to do this through like healthy eating and food, tell 1296 01:06:52,320 --> 01:06:53,720 Speaker 1: us why fiber is important. 1297 01:06:54,520 --> 01:06:58,640 Speaker 7: Definitely. So, fiber is the part of carbohydrates that doesn't 1298 01:06:58,760 --> 01:07:02,560 Speaker 7: get digested very quickly. It's longer chains of carbohydrates that 1299 01:07:02,640 --> 01:07:05,600 Speaker 7: your human enzymes can't even access. So the way to 1300 01:07:05,600 --> 01:07:07,840 Speaker 7: figure this out is if you look at a nutrition label, 1301 01:07:07,880 --> 01:07:10,320 Speaker 7: it'll list the total carbs and then it'll list the 1302 01:07:10,320 --> 01:07:12,480 Speaker 7: subset of the carbs that are fiber. So for a 1303 01:07:12,480 --> 01:07:15,000 Speaker 7: piece of white bread, it might be like nineteen grams 1304 01:07:15,000 --> 01:07:18,080 Speaker 7: of carbs one gram of fiber. Wheat bread might be 1305 01:07:18,640 --> 01:07:21,240 Speaker 7: nineteen grams of carbs five grams of fiber. Okay, cool. 1306 01:07:21,320 --> 01:07:24,080 Speaker 7: So now we're talking like you know, nearly a quarter 1307 01:07:24,120 --> 01:07:26,000 Speaker 7: of the carbs in that piece of bread is fiber. 1308 01:07:26,080 --> 01:07:29,560 Speaker 7: It's going to be slower to hit your blood sugar levels. 1309 01:07:30,160 --> 01:07:32,720 Speaker 7: It's going to persist in your digestive track down to 1310 01:07:32,760 --> 01:07:35,160 Speaker 7: your colon where all the microbes live and give them 1311 01:07:35,240 --> 01:07:37,919 Speaker 7: some food. So that's pretty good. Now let's talk about 1312 01:07:37,960 --> 01:07:40,840 Speaker 7: beans and lentils. Half of the carbs in beans and 1313 01:07:40,920 --> 01:07:43,680 Speaker 7: lentils are in the form of fiber. So if you 1314 01:07:43,760 --> 01:07:46,400 Speaker 7: eat a cup of black beans or old navy beans 1315 01:07:46,440 --> 01:07:49,680 Speaker 7: or lentils in a day, you'll get probably ten or 1316 01:07:49,720 --> 01:07:52,240 Speaker 7: twenty grams of fiber out of the thirty or forty 1317 01:07:52,280 --> 01:07:55,400 Speaker 7: grams of carbs. That's half of your fiber needs for 1318 01:07:55,440 --> 01:07:58,640 Speaker 7: the day. So the daily recommended allowance of fiber in 1319 01:07:58,640 --> 01:08:01,280 Speaker 7: the US is twenty five to three five grams per day, 1320 01:08:02,120 --> 01:08:04,600 Speaker 7: and we're usually getting half of that. Most Americans are 1321 01:08:04,600 --> 01:08:07,520 Speaker 7: getting ten to fifteen grams per day, So we all 1322 01:08:07,560 --> 01:08:09,479 Speaker 7: need to think about how to fill our fiber gap. 1323 01:08:09,480 --> 01:08:11,400 Speaker 7: You always hear about how we're not eating enough protein. 1324 01:08:11,440 --> 01:08:12,800 Speaker 7: I mean, to be honest, we're probably eating money of 1325 01:08:12,840 --> 01:08:14,800 Speaker 7: protein in the United States, but we really are not 1326 01:08:14,880 --> 01:08:18,679 Speaker 7: eating enough fiber. If you eat fiber, you are fueling 1327 01:08:18,720 --> 01:08:21,400 Speaker 7: the microbes in your colon. And then if you do 1328 01:08:21,520 --> 01:08:25,160 Speaker 7: experience some kind of stress, whether it's antibiotics or diarrhea 1329 01:08:25,280 --> 01:08:29,440 Speaker 7: or just like literally stress that causes inflammation and oxygen 1330 01:08:29,800 --> 01:08:32,200 Speaker 7: descending upon you and making it harder for those bugs 1331 01:08:32,240 --> 01:08:35,000 Speaker 7: to thrive in your colon. When you have fiber in there, 1332 01:08:35,080 --> 01:08:37,559 Speaker 7: you've given the bugs a place to hide out, so 1333 01:08:37,680 --> 01:08:40,160 Speaker 7: you can weather the storms of any kind of other 1334 01:08:40,200 --> 01:08:43,559 Speaker 7: fluctuations in your life better and keep the microbes happier. 1335 01:08:43,760 --> 01:08:46,120 Speaker 7: So like, if you did know you had to take antibiotics, 1336 01:08:46,240 --> 01:08:50,160 Speaker 7: I would definitely really recommend making sure you're eating enough 1337 01:08:50,200 --> 01:08:54,320 Speaker 7: fiber and fermented foods actually are another really good contributor. 1338 01:08:54,640 --> 01:08:57,559 Speaker 1: All right. So that's scientific evidence that chili should have 1339 01:08:57,600 --> 01:09:01,400 Speaker 1: beans in it. Settled that age old question. 1340 01:09:01,680 --> 01:09:04,600 Speaker 7: I mean, I don't think there's anyone who would disagree 1341 01:09:04,720 --> 01:09:08,240 Speaker 7: that if you wanted to protect your microbiome, having beans 1342 01:09:08,280 --> 01:09:10,200 Speaker 7: in your chili would be a good idea. 1343 01:09:10,240 --> 01:09:12,920 Speaker 3: All right, everybody, So tonight, grab your beans and your 1344 01:09:13,040 --> 01:09:16,160 Speaker 3: bino and hopefully Katrina Whitson will be back on the 1345 01:09:16,160 --> 01:09:18,360 Speaker 3: show and not too long. Thanks for spending some time 1346 01:09:18,400 --> 01:09:19,000 Speaker 3: with us today. 1347 01:09:19,479 --> 01:09:20,320 Speaker 7: Awesome. Thank you. 1348 01:09:27,439 --> 01:09:31,280 Speaker 3: Daniel and Kelly's Extraordinary Universe is produced by iHeartRadio. We 1349 01:09:31,320 --> 01:09:33,759 Speaker 3: would love to hear from you, We really would. 1350 01:09:33,920 --> 01:09:36,519 Speaker 1: We want to know what questions do you have about 1351 01:09:36,560 --> 01:09:38,519 Speaker 1: this Extraordinary Universe. 1352 01:09:38,640 --> 01:09:41,600 Speaker 3: We want to know your thoughts on recent shows, suggestions 1353 01:09:41,600 --> 01:09:44,639 Speaker 3: for future shows. If you contact us, we will get 1354 01:09:44,680 --> 01:09:45,080 Speaker 3: back to you. 1355 01:09:45,280 --> 01:09:48,800 Speaker 1: We really mean it. We answer every message. Email us 1356 01:09:48,840 --> 01:09:52,040 Speaker 1: at Questions at Danielankelly. 1357 01:09:51,120 --> 01:09:53,160 Speaker 3: Dot org, or you can find us on social media. 1358 01:09:53,240 --> 01:09:57,040 Speaker 3: We have accounts on x, Instagram, Blue Sky and on 1359 01:09:57,120 --> 01:09:59,080 Speaker 3: all of those platforms. 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