WEBVTT - Forget Going Viral - Bacterial Communication is Awesome

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<v Speaker 1>Brought to you by Toyota. Let's go places. Welcome to

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<v Speaker 1>Forward Thinking. Hey there, and welcome to Forward Thinking, the

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<v Speaker 1>podcast that looks at the future and says, I think

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<v Speaker 1>I'll call my boss. Then I'm gonna hack and cough

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<v Speaker 1>and we'see, he'll swear. I got some strange disease. I'm

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<v Speaker 1>Jonathan Strickland, and I'm Joe McCormick and Lauren. It seems

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<v Speaker 1>like you were just so eager to talk about bacteria.

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<v Speaker 1>I always want to talk about bacteria. They do great stuff.

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<v Speaker 1>They they make cheese possible kind of. They help us digesting. Yeah,

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<v Speaker 1>they make us real sick sometimes that's the best. It's

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<v Speaker 1>very important. Well yeah, sure, yes, we've talked about before

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<v Speaker 1>about how bacteria actually make up more of us than

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<v Speaker 1>we do. What by cell count mass? Yeah, I think

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<v Speaker 1>by mass it's a thing like four pounds. It's it's

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<v Speaker 1>not all that much. But yeah, we came across this

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<v Speaker 1>really interesting article in Scientific American about bacteria, and even

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<v Speaker 1>though we've kind of sort of talked about it a

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<v Speaker 1>little bit in the past, I really wanted to do

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<v Speaker 1>another episode about it because bacteria can talk to each

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<v Speaker 1>other and that's so cool. But Before we get to that,

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<v Speaker 1>let's do a quick overview on just what bacteria are

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<v Speaker 1>and why, other than the pure scientific inquiry into how

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<v Speaker 1>bacteria communicate, like how that would practically affect us, right, right,

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<v Speaker 1>So first off, I mean this is going to be

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<v Speaker 1>a review on like elementary science level, but it's important

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<v Speaker 1>to build the foundation. Bacteria are very small organisms. Um wait,

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<v Speaker 1>wait a second, yes, what do you mean small? So

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<v Speaker 1>when we call say, Matt Frederick a bacterium, we're not

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<v Speaker 1>meaning that literally because he's he's actually the size of

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<v Speaker 1>many bacteria. How many more than four? Uh so at

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<v Speaker 1>least three dozen? We're talking about usually a single cell organism, right,

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<v Speaker 1>That's typically what bacteria are. Um. They lack though exactly

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<v Speaker 1>that fact is going to become interestingly complicated. They lack

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<v Speaker 1>chlorophyll because if they had chlorophyll, then they would be

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<v Speaker 1>probably more along the lines of the plant kingdom than

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<v Speaker 1>of their own. They actually belong to a kingdom called prokaryota,

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<v Speaker 1>and that is they are they are not the only

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<v Speaker 1>inhabitants of that kingdom. Um Way, they lack a nucleus,

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<v Speaker 1>which is what puts them there. They're prokaryotic. That means

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<v Speaker 1>that they do not have a nucleus or other membrane

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<v Speaker 1>bound organelles inside of them cell command center. Yeah. Yeah,

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<v Speaker 1>they're just sell soup inside kind of sort of. Yeah,

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<v Speaker 1>it's not like you know, the or the cells that

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<v Speaker 1>we are in us. They're you karyotic. They have a

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<v Speaker 1>nucleus and membrane bound organelles and things like that. The

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<v Speaker 1>other organism that within that kingdom is our chea. Those

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<v Speaker 1>are the other prokaryotic organisms. So their DNA is just

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<v Speaker 1>contained within the cell itself. There's no nucleus there to

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<v Speaker 1>hold it, unlike ours. It's a circular chain of DNA

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<v Speaker 1>molecules that inhabit the bacteria or bacteria um because that's

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<v Speaker 1>the singular, right. How Come every time I searched for

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<v Speaker 1>stock images of bacteria, they're like a few kinds. They're

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<v Speaker 1>they're like the hot dog bacteria, and the cheese puff bacteria,

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<v Speaker 1>and the and then I think some spiral gigs. Spiral

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<v Speaker 1>gigs I always think of like Arby's curly fries. Yeah, yes,

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<v Speaker 1>it's because it's delicious bacteria. But I like my bacteria

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<v Speaker 1>covered in melted cheese sauce. Uh yeah, that's because the

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<v Speaker 1>bacteria do come in and generally in three general three shapes, right,

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<v Speaker 1>you've got the spherical ones, you've got the rod shaped bacteria,

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<v Speaker 1>and then you have the spiral the spiro keet bacteria,

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<v Speaker 1>which always makes me think of The Simpsons because there's

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<v Speaker 1>the part where uh, Lisa's teacher explains that she has

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<v Speaker 1>lyme disease and then Ralph Wiggam draws a spiro keat

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<v Speaker 1>for her and in her get well, card I drew

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<v Speaker 1>you was spiro keat. You didn't see that season? No, no, no,

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<v Speaker 1>that was the one where Lisa develops a crush on

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<v Speaker 1>the replacement teacher who comes in because he's he's very

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<v Speaker 1>smooth talking and doesn't talk down to the students, and

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<v Speaker 1>she just falls in love with him. Uh. We usually

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<v Speaker 1>use the word bacteria rather than bacteria um because we

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<v Speaker 1>tend to talk about a whole mess of them. It's

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<v Speaker 1>very rare that you're going to talk about a single

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<v Speaker 1>bacterium because steria rarely get lonely. No, they usually they

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<v Speaker 1>usually got a group of friends together, and if they

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<v Speaker 1>don't have a big group of friends together, they work

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<v Speaker 1>really hard to change that. Yeah. So that's those Those

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<v Speaker 1>are your general like simple foundational facts. About bacteria, and

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<v Speaker 1>like Lauren was saying, there are tons of different kinds.

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<v Speaker 1>Even within these three main classifications of shapes, there are

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<v Speaker 1>tons of different kinds. Some of them are beneficial to us,

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<v Speaker 1>some of them can make you very very ill, and

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<v Speaker 1>some of them we just don't really react, like there's

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<v Speaker 1>no interaction, and some are pretty neutral. Yeah. Yeah, it's

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<v Speaker 1>kind of like a you know, a D and D campaign. Really,

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<v Speaker 1>you've got some, You've got some that are like lawful good,

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<v Speaker 1>and then you get kaolic evil, and then true neutral.

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<v Speaker 1>So those are your basic types. Uh. And then we

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<v Speaker 1>got to get on over to the how how bacteria,

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<v Speaker 1>like the unwanted kind, the stuff we don't want in

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<v Speaker 1>our systems, how those can interact with us and make

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<v Speaker 1>us not feel so great. And that's one of the

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<v Speaker 1>primary reasons why we are interested as a human population,

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<v Speaker 1>not the three of us in this room, in studying bacteria,

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<v Speaker 1>because of aously, people getting sick is bad. We want

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<v Speaker 1>that to happen less often. Uh, And instead it seems

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<v Speaker 1>to be happening more often. And our primary means of

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<v Speaker 1>fighting bacteria tends to be using the use of antibiotics.

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<v Speaker 1>But we're kind of in an arms race, aren't we. Yeah,

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<v Speaker 1>that's a great way of putting it is. It's that

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<v Speaker 1>we come up with an antibiotic, and then bacteria can

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<v Speaker 1>sometimes find a means to resist that antibiotic, thus making

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<v Speaker 1>it less effective. Any population of bacteria that still remain

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<v Speaker 1>after an antibiotic has been moved through a system are

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<v Speaker 1>more capable of resisting it in the future, thus creating

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<v Speaker 1>kind of super bacteria. Yeah, it's evolution on the micro scale.

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<v Speaker 1>And in this way, bacteria are kind of like the borg.

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<v Speaker 1>I mean, what happens when you use a weapon on

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<v Speaker 1>the borg? They immediately recognize that attack. Once if the

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<v Speaker 1>attack is successful, they recognize it, they adjust their shields

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<v Speaker 1>so that now it absorbs it. That's why you always

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<v Speaker 1>have to vary the frequency, right, except in antibiotics, we

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<v Speaker 1>can't really vary the frequency. And we talked a lot

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<v Speaker 1>about this, well, not about borgs, but about this general

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<v Speaker 1>topic in our episode the antibiotic Dilemma, which came out

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<v Speaker 1>in March. But right, you know, antibiotics, the point of

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<v Speaker 1>them is to slow down the growth of bacteria, you know,

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<v Speaker 1>either kill them or slow them down to the point

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<v Speaker 1>that your immune system can successfully fight off an infection.

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<v Speaker 1>On its own. And the problem here is is that

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<v Speaker 1>bacteria again have a lot of friends hanging out with them.

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<v Speaker 1>They multiply so fast and so densely that colonies can

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<v Speaker 1>evolve to be resistant really really quickly. They divide by fission,

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<v Speaker 1>and they can do that within twelve hours, so within

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<v Speaker 1>the twenty four hour period the population can increase significantly. Yeah,

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<v Speaker 1>and like you guys were saying, it's hard for antibiotics

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<v Speaker 1>to keep up with them because the mechanisms through which

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<v Speaker 1>antibiotics kill bacteria tend to be really easily foiled by evolution.

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<v Speaker 1>For example, lots of antibiotics kill by basically just stabbing

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<v Speaker 1>bacteria in their outer cell walls, uh, kind of sort

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<v Speaker 1>of just making them rupture all of their cell guts

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<v Speaker 1>spill out dead bacteria. But you know, critters with stronger

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<v Speaker 1>cell walls will survive and multiply, and future generations will

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<v Speaker 1>be less likely to be harmed by stabbing. So this

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<v Speaker 1>is particularly an issue because we have become so dependent

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<v Speaker 1>on antibiotics to solve bacterial disease problems, like we use

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<v Speaker 1>them as blanket measures, and even healthy animals that we

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<v Speaker 1>wind up eating we prescribe them for sometimes non relevant

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<v Speaker 1>diseases or in cases that won't really significantly help the patient.

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<v Speaker 1>We use them as blanket measures in like our hand

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<v Speaker 1>soaps and dish soaps, instead of just promoting say, food

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<v Speaker 1>handling and regular old handwashing, which are usually just as effective.

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<v Speaker 1>And this would be I mean, this gets exacerbated if

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<v Speaker 1>there's a misdiagnosis. Obviously, if you were prescribed antibiotics for

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<v Speaker 1>something that ended up being a viral infection, it's not

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<v Speaker 1>going to help you at all. Viral infections are different

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<v Speaker 1>from bacterial infections. Yeah, so this is like if in

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<v Speaker 1>a universe populated by borg we used our best weapon

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<v Speaker 1>against the borg too, I don't know, clean the outside

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<v Speaker 1>of our starships and then yeah, oh accidentally went past

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<v Speaker 1>a board foot. Now they know how to stop it.

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<v Speaker 1>That would that would be foolish of us. But yet

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<v Speaker 1>that's maybe that was a horrible analogy. I don't know.

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<v Speaker 1>That's kind of what we do occasionally with you know.

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<v Speaker 1>It's it's not that people are uh, you know, kind

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<v Speaker 1>of doing a blanket carpet bombing with antibiotics. It's just

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<v Speaker 1>that that it has been such an effective tool and

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<v Speaker 1>has saved so many lives that the the desire to

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<v Speaker 1>go to that early is very strong, oh Sharon. And

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<v Speaker 1>before we realized that that these antibiotic resistant strains were

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<v Speaker 1>starting to develop, it seemed like a really great plan.

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<v Speaker 1>And but then all of a sudden we wound up

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<v Speaker 1>with stuff like um m R s A, which I

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<v Speaker 1>could never pronounce the full name of. I'm not even

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<v Speaker 1>gonna try. The cyllin resistant staff willocaucus arius. Yeah, go Joe, right,

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<v Speaker 1>that sounds good to me. Methicillin resistant staff lacaucus arius.

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<v Speaker 1>Well there we go, now, you know, and knowing's half

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<v Speaker 1>the battle. The other half is red lacing. The other

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<v Speaker 1>way you could say is that it's staff. It's a

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<v Speaker 1>staff infection that has become resistant to the antibiotic methyicillin. Yes,

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<v Speaker 1>because normally staff infections are just skin infections, but in hospitals,

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<v Speaker 1>m R. S A can cause deadly blood and surgical

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<v Speaker 1>infections and pneumonia, nasty stuff like that. It's this is

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<v Speaker 1>also where we got stuff like gnarrhea that never goes away. Yeah,

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<v Speaker 1>bad times. So okay, we still need to use antibiotics

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<v Speaker 1>in some situations. They still save lots and lots of

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<v Speaker 1>lives unless we can find some other way of fighting bacteria,

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<v Speaker 1>and that leads us into a discussion about how bacteria

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<v Speaker 1>act on moss, because there's a there's a question that

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<v Speaker 1>you have to ask yourself when you start looking at

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<v Speaker 1>bacterial behavior, which is, how can something this this very simple,

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<v Speaker 1>single celled organism, how does it know quote unquote when

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<v Speaker 1>to unleash the kraken of bacterial infection upon a host? Right,

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<v Speaker 1>Because even even bacteria that can typically be very dangerous

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<v Speaker 1>to us are not always in their dangerous state. There

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<v Speaker 1>there's a few factors that go into whether or not

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<v Speaker 1>bacteria make you sick, and that includes, um, whether or

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<v Speaker 1>not they're pathogenic, which is whether or not they're in

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<v Speaker 1>like attack mode, and how virulent they are, which is, um,

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<v Speaker 1>how little stabby, Yeah, that's a good way of putting it. Yeah,

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<v Speaker 1>And are they angry? How hungry are they? And sometimes

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<v Speaker 1>it's just that they have to wait until the population

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<v Speaker 1>is a certain size and then that's when they unleashed

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<v Speaker 1>the dogs of war or the cracker however, whatever you

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<v Speaker 1>want to I'm gonna just keep saying unleashed stuff. It's

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<v Speaker 1>like you're you're you're playing StarCraft and you're trying to

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<v Speaker 1>save up for a zerk swarm right right, and you

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<v Speaker 1>just you know there's going to be one. You just

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<v Speaker 1>you're not sure when. And you know it's not gonna

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<v Speaker 1>be something like You're not gonna have a case where

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<v Speaker 1>it's just one or two things coming at you. It's

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<v Speaker 1>just gonna be a mass of them. I I apologize

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<v Speaker 1>if I said that wrong. I've never actually played star Craft.

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<v Speaker 1>I just know that's a thing. You just lost cred

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<v Speaker 1>with pg O. You're like way ahead, all right, so

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<v Speaker 1>so so yeah, So it turns out that bacteria, despite

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<v Speaker 1>not having a brain or even a cell nucleus, communicate

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<v Speaker 1>with each other, and it's in a really interesting way.

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<v Speaker 1>The way this was sort of observed early on was

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<v Speaker 1>through um an experiment in which some researchers were using

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<v Speaker 1>bacteria called Vibrio fisher i, which is a type of

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<v Speaker 1>bacteria that is luminescent. When when there are a certain

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<v Speaker 1>number of the bacteria, then they all uh in sync

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<v Speaker 1>luminesce they glow. Yeah, so they actually there was a

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<v Speaker 1>Ted talk we watched in which the presenter showed a

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<v Speaker 1>picture of a flask of this stuff and it's just

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<v Speaker 1>glowing green. It looks like, you know, the stuff you

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<v Speaker 1>would see in a glow stick, but in this case

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<v Speaker 1>it was just the bacteria that had reached a certain

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<v Speaker 1>population density. And that's the key. They call it quorum sensing.

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<v Speaker 1>And by that what they mean is the bacteria are

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<v Speaker 1>able to produce the sort of molecular um uh signals,

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<v Speaker 1>let's say, chemicals that that are essentially saying hey, I'm

0:14:03.559 --> 0:14:07.400
<v Speaker 1>here and uh. They're called auto inducers, and they also

0:14:07.480 --> 0:14:11.040
<v Speaker 1>have sensors. This this essentially a receptor that's on the

0:14:11.080 --> 0:14:16.160
<v Speaker 1>bacterial cell wall. So their message molecules and in ways

0:14:16.200 --> 0:14:20.440
<v Speaker 1>of detecting right. And so what will happen is if

0:14:20.680 --> 0:14:24.040
<v Speaker 1>the bacterium is all by, it's lonesome, it sends these

0:14:24.040 --> 0:14:28.760
<v Speaker 1>autoinducers out which just float away and nothing gets picked up. Yeah,

0:14:28.880 --> 0:14:31.880
<v Speaker 1>it's not targeted. It's not like I am bacteria or

0:14:31.920 --> 0:14:35.560
<v Speaker 1>Bacterium Laura, and I am aiming at Bacterium Jonathan to

0:14:35.640 --> 0:14:38.640
<v Speaker 1>send a message. It's just like a Hey. It's kind

0:14:38.640 --> 0:14:41.720
<v Speaker 1>of like imagine that you are stranded on a deserted

0:14:41.760 --> 0:14:44.880
<v Speaker 1>island and you have your your collection of bottles and

0:14:44.920 --> 0:14:47.440
<v Speaker 1>collection of parchment, and you're writing down messages and throwing

0:14:47.480 --> 0:14:49.680
<v Speaker 1>them into the ocean, hoping someone picks them up. Same

0:14:49.680 --> 0:14:51.800
<v Speaker 1>sort of thing. Or it could be that you are

0:14:52.000 --> 0:14:57.400
<v Speaker 1>in a post zombie outbreak safe haven with a radio

0:14:57.600 --> 0:15:01.320
<v Speaker 1>transmitter and you're transmitting your location in your coordinates and saying, hey,

0:15:01.360 --> 0:15:04.400
<v Speaker 1>we should we humans should band together, right, But you're

0:15:04.440 --> 0:15:08.280
<v Speaker 1>doing it, you know, on a frequency that you've picked

0:15:08.320 --> 0:15:10.600
<v Speaker 1>at random that people may or may not be listening to.

0:15:11.200 --> 0:15:15.880
<v Speaker 1>So as you get more of the bacteria cells around

0:15:16.560 --> 0:15:20.120
<v Speaker 1>the there grows, there's the density that grows of these

0:15:20.200 --> 0:15:22.880
<v Speaker 1>auto inducer these molecules that are sent out because all

0:15:22.920 --> 0:15:25.080
<v Speaker 1>of them are are admitting them, right, So you're sending

0:15:25.080 --> 0:15:27.680
<v Speaker 1>out more and more because the population is growing. When

0:15:27.680 --> 0:15:31.200
<v Speaker 1>you reach a certain threshold, then the bacterial cells will

0:15:31.240 --> 0:15:36.240
<v Speaker 1>be able to detect the presence of those auto inducers,

0:15:36.280 --> 0:15:40.560
<v Speaker 1>and that is the message that to say, hey, express

0:15:40.720 --> 0:15:45.840
<v Speaker 1>this gene that does something. In the case of the

0:15:45.880 --> 0:15:50.240
<v Speaker 1>Fibrio fisheri bacteria, it was to luminess to to glow.

0:15:50.840 --> 0:15:53.600
<v Speaker 1>Another way that this gene can be expressed, though, is

0:15:53.640 --> 0:15:56.280
<v Speaker 1>in the production of biofilms, which is something I'm gonna

0:15:56.320 --> 0:15:58.520
<v Speaker 1>talk about in a minute, right. Yeah, there's a few

0:15:58.560 --> 0:16:03.960
<v Speaker 1>different auto inducer signals that can happen. The on and

0:16:04.040 --> 0:16:07.560
<v Speaker 1>off switch of of pathogenesis um kind of scale of

0:16:07.640 --> 0:16:12.720
<v Speaker 1>virulence um, the formation of protective spores around individual bacterium

0:16:12.720 --> 0:16:16.040
<v Speaker 1>which which tell the bacterium, hey, time to bunker down

0:16:16.080 --> 0:16:19.680
<v Speaker 1>for a minute and hold on uh. And the also

0:16:19.720 --> 0:16:23.200
<v Speaker 1>the creation of certain substances stuff like that. Yeah, And

0:16:23.240 --> 0:16:26.440
<v Speaker 1>it's kind of neat because this is not limited just

0:16:26.640 --> 0:16:31.360
<v Speaker 1>to intra species communication. In other words, you could have

0:16:31.560 --> 0:16:35.960
<v Speaker 1>a population of bacteria that can all communicate with one another.

0:16:36.080 --> 0:16:39.800
<v Speaker 1>The the auto inducers that they are emitting our only

0:16:40.320 --> 0:16:43.560
<v Speaker 1>keyed to members of that bacteria. In other words, you

0:16:43.560 --> 0:16:45.160
<v Speaker 1>can think of it like a key that will only

0:16:45.200 --> 0:16:49.280
<v Speaker 1>fit a specific lock. But they can also emit other

0:16:49.560 --> 0:16:53.960
<v Speaker 1>auto inducers that are more universal that all bacteria can accept.

0:16:53.960 --> 0:16:57.040
<v Speaker 1>The microbes are uniting against us, they kind of are.

0:16:57.400 --> 0:17:01.240
<v Speaker 1>Although researchers suspect that this thro out of a competition

0:17:01.280 --> 0:17:05.680
<v Speaker 1>for resources between different species. There's one particular auto inducer

0:17:05.720 --> 0:17:08.879
<v Speaker 1>called AI too, which a whole lot of species are

0:17:08.960 --> 0:17:12.760
<v Speaker 1>keyed into. And and it seems like like quorum sensing

0:17:13.240 --> 0:17:17.080
<v Speaker 1>espionage goes on between species to like try to confuse

0:17:17.200 --> 0:17:22.399
<v Speaker 1>different different other bugs. You might have one population of

0:17:22.480 --> 0:17:25.920
<v Speaker 1>bacteria accepting these saying all right, now we know who

0:17:25.960 --> 0:17:27.920
<v Speaker 1>else is out there, but we're not gonna say anything.

0:17:28.320 --> 0:17:32.240
<v Speaker 1>We're we're only going to communicate using our own specific language,

0:17:32.440 --> 0:17:35.880
<v Speaker 1>and that way we can prepare and unleash the dogs

0:17:35.880 --> 0:17:38.080
<v Speaker 1>of war one and we can trick them into calming

0:17:38.119 --> 0:17:41.959
<v Speaker 1>down for a while. Really, So there's also microbial disinformation

0:17:42.440 --> 0:17:44.560
<v Speaker 1>sort of. It's really more of a decision about whether

0:17:44.640 --> 0:17:47.399
<v Speaker 1>to communicate or not, right, the idea being like do

0:17:47.440 --> 0:17:50.280
<v Speaker 1>you reveal that you are there, or do you keep

0:17:50.280 --> 0:17:52.679
<v Speaker 1>its secrets so that you can build up your resources

0:17:52.680 --> 0:17:55.960
<v Speaker 1>to a point where you then switch it on and attack. Um,

0:17:56.200 --> 0:17:58.359
<v Speaker 1>keep in mind, like there are a lot of bacteria

0:17:58.400 --> 0:18:01.199
<v Speaker 1>that are very much protective of a host, and then

0:18:01.200 --> 0:18:03.160
<v Speaker 1>there are other bacteria that can be very harmful. So

0:18:04.200 --> 0:18:07.600
<v Speaker 1>it behooves the harmful bacteria to kind of keep things

0:18:07.680 --> 0:18:12.520
<v Speaker 1>on the quiet before going you know, ballistic, right, to

0:18:12.640 --> 0:18:15.640
<v Speaker 1>have enough of a population to really do what it's

0:18:15.640 --> 0:18:19.160
<v Speaker 1>intending to do before the host's immune system can figure

0:18:19.160 --> 0:18:22.600
<v Speaker 1>it out. Right, right, So, uh yeah, we've already kind

0:18:22.600 --> 0:18:25.480
<v Speaker 1>of talked about some of these different genetic expressions. There

0:18:25.480 --> 0:18:29.720
<v Speaker 1>are also cases where the population density actually informs the

0:18:29.760 --> 0:18:33.919
<v Speaker 1>bacteria to turn off expression. One of these is in

0:18:34.320 --> 0:18:39.280
<v Speaker 1>cholera cholera, if the population gets too dense, then essentially

0:18:39.359 --> 0:18:41.600
<v Speaker 1>the message goes out to hey, guys, let's calm it

0:18:41.640 --> 0:18:43.920
<v Speaker 1>down a little bit. We're going to kill this guy. Yeah,

0:18:43.960 --> 0:18:46.960
<v Speaker 1>and we want to be able to uh, to spread

0:18:47.200 --> 0:18:50.400
<v Speaker 1>this as much as possible. That's our purpose. But if

0:18:50.440 --> 0:18:54.400
<v Speaker 1>we go crazy, then the host may die as a result,

0:18:54.560 --> 0:18:58.320
<v Speaker 1>or when in the case of cholera, the victim may

0:18:58.480 --> 0:19:03.280
<v Speaker 1>end up experience experience seeing severe diarrhea, which then pretty

0:19:03.359 --> 0:19:06.480
<v Speaker 1>much pushes out tons of the bacteria as a result.

0:19:07.000 --> 0:19:10.879
<v Speaker 1>So it all depends upon the actual bacteria and what

0:19:11.200 --> 0:19:14.480
<v Speaker 1>its quote unquote goals are, like what what its survival

0:19:14.520 --> 0:19:18.320
<v Speaker 1>strategy is, and that determines whether or not it's turning

0:19:18.480 --> 0:19:20.840
<v Speaker 1>on a gene once it hits a certain density or

0:19:20.880 --> 0:19:23.920
<v Speaker 1>turning off a gene once it hits a certain density. Right,

0:19:24.040 --> 0:19:27.840
<v Speaker 1>So there are lots of different research teams studying quorum

0:19:27.840 --> 0:19:30.680
<v Speaker 1>sensing and looking for ways to either disrupt it or

0:19:30.760 --> 0:19:34.080
<v Speaker 1>artificially stimulate it. So they're looking into the chemicals and

0:19:34.119 --> 0:19:36.639
<v Speaker 1>the enzymes that are used in the process, plus the

0:19:36.680 --> 0:19:42.120
<v Speaker 1>mechanisms that the bacteria have for creating and detecting these signals. Yeah,

0:19:42.119 --> 0:19:45.040
<v Speaker 1>and I guess that leads us to the article that

0:19:45.520 --> 0:19:47.159
<v Speaker 1>made us want to talk about this today. It was

0:19:47.160 --> 0:19:52.159
<v Speaker 1>an interesting article in Scientific American from August about what

0:19:52.160 --> 0:19:57.120
<v Speaker 1>what they called molecular tweeting in the study of bacterial communication.

0:19:57.160 --> 0:20:04.760
<v Speaker 1>Now this doesn't mean bacteria literally using Twitter are not characters. No,

0:20:04.880 --> 0:20:08.200
<v Speaker 1>But I wonder I can't come up with a good

0:20:08.440 --> 0:20:10.560
<v Speaker 1>joke there. I do wonder. I do wonder if they

0:20:10.560 --> 0:20:13.560
<v Speaker 1>occasionally attempt to tweet out a pizza slice and hopes

0:20:13.640 --> 0:20:19.960
<v Speaker 1>that Dominoes will deliver to them. Yeah, you haven't seen

0:20:20.000 --> 0:20:23.080
<v Speaker 1>those commercials. Yeah, that's a new thing where you can

0:20:23.119 --> 0:20:26.800
<v Speaker 1>tweet out a emoji of a pizza slice and you

0:20:26.880 --> 0:20:29.800
<v Speaker 1>order yourself a pizza. But what if it's not the

0:20:29.880 --> 0:20:31.880
<v Speaker 1>kind of pizza you want? I think you. I think

0:20:31.920 --> 0:20:34.480
<v Speaker 1>you set up a profile to say what type of

0:20:34.480 --> 0:20:40.000
<v Speaker 1>pizza you want? Whenever you send that it's not gluten free. Yeah,

0:20:40.080 --> 0:20:45.280
<v Speaker 1>so this is a new bit of research about bacterial communications.

0:20:45.280 --> 0:20:47.960
<v Speaker 1>So it was a team of researchers at Carnegie Mellon

0:20:48.080 --> 0:20:53.280
<v Speaker 1>University led by the engineering professor du Marculiske, and they

0:20:53.320 --> 0:20:55.919
<v Speaker 1>wanted to use Twitter as a model to sort of

0:20:55.960 --> 0:21:02.000
<v Speaker 1>help us visualize or understand different hypes of bacterial communication,

0:21:02.080 --> 0:21:06.359
<v Speaker 1>how bacteria communicate with each other to form antibiotic resistant

0:21:06.480 --> 0:21:10.240
<v Speaker 1>superstructures called biofilms. Yeah, this is interesting to me because

0:21:10.560 --> 0:21:13.880
<v Speaker 1>it's when you might ask why Twitter. But if you've

0:21:13.920 --> 0:21:16.800
<v Speaker 1>ever if you ever noticed something, when something begins to

0:21:16.840 --> 0:21:20.040
<v Speaker 1>trend on Twitter, it's hit a certain density, like a

0:21:20.119 --> 0:21:23.840
<v Speaker 1>pop culture density within Twitter itself, And that's kind of

0:21:23.840 --> 0:21:28.480
<v Speaker 1>what they were comparing the behavior of bacteria too. That

0:21:28.920 --> 0:21:32.080
<v Speaker 1>if you have enough people sending out this one little message,

0:21:32.080 --> 0:21:35.120
<v Speaker 1>whether it's a hashtag or whatever, and then it catches on,

0:21:35.400 --> 0:21:38.359
<v Speaker 1>that could be similar to the way a bacterial UH

0:21:38.600 --> 0:21:41.320
<v Speaker 1>community sends out these messages to the point where it

0:21:41.440 --> 0:21:45.560
<v Speaker 1>hits that population density. Yeah, it's a really clever metaphor.

0:21:45.680 --> 0:21:48.800
<v Speaker 1>And also it is completely scientifically factual that people on

0:21:48.840 --> 0:21:54.520
<v Speaker 1>Twitter will form UH slimy yet protective surfaces against which

0:21:54.880 --> 0:21:59.639
<v Speaker 1>the greater population is protective. I've been there, I've seen it.

0:22:00.000 --> 0:22:02.639
<v Speaker 1>We should talk about what these surfaces are. What are

0:22:02.680 --> 0:22:06.320
<v Speaker 1>you're actually referring to. So large numbers of bacteria can

0:22:06.440 --> 0:22:10.800
<v Speaker 1>communicate with one another to work together to form biofilm

0:22:10.920 --> 0:22:15.440
<v Speaker 1>that protects them from threats. So a bacterium floating along

0:22:15.520 --> 0:22:18.360
<v Speaker 1>individually in water is something we would refer to as

0:22:18.520 --> 0:22:21.960
<v Speaker 1>plank tonic. That's plank tonic bacteria. You can think of

0:22:21.960 --> 0:22:24.359
<v Speaker 1>it kind of like plankton in the ocean, is little

0:22:24.400 --> 0:22:29.199
<v Speaker 1>bits floating along by themselves. They're free swimming. But biofilms

0:22:29.200 --> 0:22:33.520
<v Speaker 1>are structures that are created when microorganisms like bacteria fix

0:22:33.600 --> 0:22:38.000
<v Speaker 1>themselves down to a surface and they form dense conglomerations.

0:22:38.480 --> 0:22:42.120
<v Speaker 1>So instead of using resources to build structures like flagella

0:22:42.280 --> 0:22:47.040
<v Speaker 1>that help them swim along, they divert those resources and

0:22:47.080 --> 0:22:51.960
<v Speaker 1>instead use them to build extracellular matrix, which is a

0:22:52.040 --> 0:22:56.560
<v Speaker 1>kind of slime or polymer film that forms a protective

0:22:56.640 --> 0:23:00.840
<v Speaker 1>structure around the bacteria. And these large back sterial films

0:23:00.880 --> 0:23:04.119
<v Speaker 1>might be thought of as a kind of multicellular organism

0:23:04.240 --> 0:23:11.600
<v Speaker 1>made out of former single celled organisms. Yeah, it's pretty gross. Especially, yeah,

0:23:11.760 --> 0:23:15.199
<v Speaker 1>it's gross because they can form inside your body. Bacterial

0:23:15.240 --> 0:23:17.679
<v Speaker 1>films can be really bad first because they have tougher

0:23:17.720 --> 0:23:20.520
<v Speaker 1>defenses and they can linger inside the body for a

0:23:20.560 --> 0:23:23.840
<v Speaker 1>long time and cause chronic infections. They're much more resistant

0:23:23.920 --> 0:23:28.800
<v Speaker 1>to your to your immune system, and to antibiotics because

0:23:28.800 --> 0:23:32.400
<v Speaker 1>of these protective structures and matrices that they form. Yeah,

0:23:32.600 --> 0:23:35.280
<v Speaker 1>it's sort of like going back to Star Trek, going

0:23:35.359 --> 0:23:38.520
<v Speaker 1>like like divertal power to the forward shields and then

0:23:38.800 --> 0:23:41.439
<v Speaker 1>you know, yeah, it's a community of a power grid

0:23:41.760 --> 0:23:45.720
<v Speaker 1>adding to a single point of of shielding. Right, But

0:23:45.960 --> 0:23:51.560
<v Speaker 1>how do brainless, single cell little critters decide to do this, Like,

0:23:51.600 --> 0:23:54.720
<v Speaker 1>how do they figure out when they can form a

0:23:55.200 --> 0:23:58.720
<v Speaker 1>biofilm instead of and how that will help? Yeah, So

0:23:58.760 --> 0:24:01.480
<v Speaker 1>the CMU researchers that we're referred to in this Scientific

0:24:01.520 --> 0:24:05.520
<v Speaker 1>American article started by observing bacteria in the process of

0:24:05.560 --> 0:24:09.360
<v Speaker 1>coming together to form biofilms. So they got some bacteria,

0:24:09.760 --> 0:24:12.600
<v Speaker 1>set them to work, and observed what they did. And

0:24:12.640 --> 0:24:16.040
<v Speaker 1>they were trying to observe the specific conditions under which

0:24:16.080 --> 0:24:20.120
<v Speaker 1>biofilm growth takes place. And then they use that information

0:24:20.240 --> 0:24:23.600
<v Speaker 1>to make some software that could simulate the behavior of

0:24:23.640 --> 0:24:27.680
<v Speaker 1>bacteria undergoing biofilm growth. And this is the real outcome

0:24:27.720 --> 0:24:30.040
<v Speaker 1>of this study is the idea is the idea that

0:24:30.040 --> 0:24:35.040
<v Speaker 1>we can create simulations of how bacteria communicate with one

0:24:35.080 --> 0:24:38.880
<v Speaker 1>another under these circumstances, which can help us learn how

0:24:38.920 --> 0:24:42.480
<v Speaker 1>to defeat them once and for all. Yeah, I mean

0:24:42.920 --> 0:24:45.960
<v Speaker 1>even if you could just uh, because we've talked about

0:24:46.240 --> 0:24:51.720
<v Speaker 1>or or rather, scientists have talked about either replacing or

0:24:51.840 --> 0:24:56.240
<v Speaker 1>or restricting communication among bacteria as a means to keep

0:24:56.280 --> 0:24:59.199
<v Speaker 1>them from being able to form these defensive measures or

0:24:59.280 --> 0:25:05.199
<v Speaker 1>to uh delay virulence or or not anys genesis. That

0:25:05.320 --> 0:25:08.040
<v Speaker 1>the idea that if we can mess up their communication lines,

0:25:08.560 --> 0:25:12.080
<v Speaker 1>then they'll never know that they're at the stage where

0:25:12.080 --> 0:25:16.159
<v Speaker 1>they could unleash the krackn Right, So what does all

0:25:16.200 --> 0:25:18.399
<v Speaker 1>this have to do with Twitter? We mentioned Twitter Twitter

0:25:18.440 --> 0:25:21.719
<v Speaker 1>a minute ago. Well, it was pretty interesting that Twitter

0:25:21.920 --> 0:25:25.679
<v Speaker 1>user behavior proved to be a really interesting metaphor for

0:25:25.760 --> 0:25:29.600
<v Speaker 1>three different behavior models that they used in their simulations

0:25:29.640 --> 0:25:33.919
<v Speaker 1>of bacteria. So there's let's call them type one through three.

0:25:34.400 --> 0:25:38.440
<v Speaker 1>Type one bacteria tweets and retweets, and what it tweets

0:25:38.480 --> 0:25:41.680
<v Speaker 1>and retweets are signaling molecules, those things you talked about

0:25:41.720 --> 0:25:45.520
<v Speaker 1>in coorum sensing earlier. So it sends out messages to

0:25:45.560 --> 0:25:49.639
<v Speaker 1>build biofilm, and it relays the messages to build biofilm

0:25:49.720 --> 0:25:54.919
<v Speaker 1>that it receives Type two bacteria tweets but doesn't retweet.

0:25:55.680 --> 0:25:59.320
<v Speaker 1>So it sends out messages, It sends out the signaling molecules,

0:25:59.320 --> 0:26:02.400
<v Speaker 1>but it doesn't retweet the messages it receives and then

0:26:02.480 --> 0:26:06.879
<v Speaker 1>type three. This is interesting is lurker bacteria. These are

0:26:06.920 --> 0:26:09.800
<v Speaker 1>these are the ones that don't post. They don't repost,

0:26:10.520 --> 0:26:14.959
<v Speaker 1>they just absorb. Yeah, so they sit there and they

0:26:15.000 --> 0:26:17.800
<v Speaker 1>don't send a relay messages, but instead just create their

0:26:17.800 --> 0:26:22.040
<v Speaker 1>own materials to grow biofilm. And according to the Scientific

0:26:22.080 --> 0:26:25.240
<v Speaker 1>American article, Markliskew is going to be presenting research on

0:26:25.320 --> 0:26:30.600
<v Speaker 1>this subject at the Association for Computing Machinery Conference on Bioinformatics,

0:26:30.640 --> 0:26:34.240
<v Speaker 1>Computational Biology and Health Informatics, which is going to be

0:26:34.320 --> 0:26:38.360
<v Speaker 1>right here in Atlanta starting on September nine, tomorrow, exactly

0:26:39.880 --> 0:26:42.919
<v Speaker 1>taking place between the time that we record in this

0:26:42.960 --> 0:26:45.920
<v Speaker 1>episode goes live. So if he says something world shattering

0:26:46.560 --> 0:26:49.200
<v Speaker 1>and you all already know about it by the time

0:26:49.240 --> 0:26:52.400
<v Speaker 1>you hear this, whoops. But well, well, if if it's

0:26:52.400 --> 0:26:55.280
<v Speaker 1>earth shattering, we will also address it in a future

0:26:55.400 --> 0:26:58.240
<v Speaker 1>episode where we're like, hey, here's some stuff that happened

0:26:58.760 --> 0:27:02.880
<v Speaker 1>since we recorded. Yeah, this is all really interesting to me,

0:27:03.400 --> 0:27:06.720
<v Speaker 1>and uh, a lot of information that I was not

0:27:06.760 --> 0:27:09.360
<v Speaker 1>aware of before we started doing the research. Yeah. One

0:27:09.400 --> 0:27:11.239
<v Speaker 1>of the things that I think is interesting about this

0:27:11.320 --> 0:27:15.960
<v Speaker 1>is it's yet another example of people trying to create

0:27:16.000 --> 0:27:19.840
<v Speaker 1>computer simulations to solve problems. This is something that comes

0:27:19.920 --> 0:27:23.240
<v Speaker 1>up a lot on this show, I think, because and

0:27:23.320 --> 0:27:26.760
<v Speaker 1>it's interesting because simulations like these are going to be

0:27:26.800 --> 0:27:31.400
<v Speaker 1>incredibly helpful, but by themselves, they will never solve a problem.

0:27:31.560 --> 0:27:35.520
<v Speaker 1>They're just tools that help us work out what we

0:27:35.600 --> 0:27:39.160
<v Speaker 1>need to test, to figure out how to fight these

0:27:39.200 --> 0:27:42.560
<v Speaker 1>things right, and how to best use our resources. Because

0:27:42.560 --> 0:27:45.520
<v Speaker 1>if you just dig in there and you go like, okay, bacteria,

0:27:45.600 --> 0:27:49.800
<v Speaker 1>let's try sending this chemical at you, then that's that's

0:27:49.840 --> 0:27:53.280
<v Speaker 1>a less good way of going about your spending your

0:27:53.320 --> 0:27:55.600
<v Speaker 1>research time and money. Yeah, and I think it's sort

0:27:55.640 --> 0:28:00.399
<v Speaker 1>of part of a larger narrative that it's all about

0:28:00.480 --> 0:28:05.160
<v Speaker 1>modeling the real world and simulation, Like how how close

0:28:05.440 --> 0:28:10.239
<v Speaker 1>to the complex behaviors of real world phenomena can we

0:28:10.359 --> 0:28:14.320
<v Speaker 1>get with computer programs. Obviously, the closer we can get,

0:28:14.359 --> 0:28:17.280
<v Speaker 1>the more we can test in the virtual space rather

0:28:17.359 --> 0:28:19.800
<v Speaker 1>than testing in the physical space before we know what

0:28:19.960 --> 0:28:22.439
<v Speaker 1>the answer is. But there's always going to be that

0:28:22.520 --> 0:28:26.720
<v Speaker 1>gap between simulation and reality. Yeah. And and also we

0:28:26.720 --> 0:28:31.399
<v Speaker 1>should mention that even if we really crack the code

0:28:31.440 --> 0:28:34.359
<v Speaker 1>on this and it becomes a means for us to

0:28:34.640 --> 0:28:38.640
<v Speaker 1>combat bacterial infections in a new way. There's nothing to

0:28:38.680 --> 0:28:43.120
<v Speaker 1>say that this is the end of disease or anything bacterial,

0:28:44.320 --> 0:28:47.320
<v Speaker 1>but even bacterial vectors. It's not the end of disease.

0:28:47.800 --> 0:28:50.560
<v Speaker 1>Um that's something that is important to remember. But it

0:28:50.600 --> 0:28:55.680
<v Speaker 1>could certainly give us an advantage in the foreseeable future.

0:28:55.760 --> 0:28:58.200
<v Speaker 1>But there's nothing saying that further down the line there

0:28:58.200 --> 0:29:02.120
<v Speaker 1>won't be another um mutation or advantage that makes this

0:29:02.360 --> 0:29:08.160
<v Speaker 1>less effective or as dr and Malcolm would say, finds

0:29:08.160 --> 0:29:12.160
<v Speaker 1>a way. Yeah. Well that's really the bottom line in

0:29:12.240 --> 0:29:15.120
<v Speaker 1>the story of evolution, in't it, Because we're fighting against

0:29:15.200 --> 0:29:17.760
<v Speaker 1>evolution and that's a battle you can't in the long

0:29:17.920 --> 0:29:23.360
<v Speaker 1>term win. Yeah. You could, actually you could completely eradicate

0:29:23.400 --> 0:29:26.520
<v Speaker 1>a species, or you could I mean, I guess you

0:29:26.520 --> 0:29:29.680
<v Speaker 1>could impose limitation so harsh that they come down to

0:29:29.720 --> 0:29:33.920
<v Speaker 1>the laws of physics and no adaptation. But I mean, like,

0:29:33.960 --> 0:29:38.240
<v Speaker 1>you can't have an organism that adapts to five thousand

0:29:38.320 --> 0:29:41.959
<v Speaker 1>degrees fahrenheit. But in most of those cases it requires

0:29:42.320 --> 0:29:46.000
<v Speaker 1>action so extreme that we would be uh negatively impacting

0:29:46.080 --> 0:29:49.080
<v Speaker 1>ourselves in the process. Yeah, and either way, you can

0:29:49.200 --> 0:29:54.200
<v Speaker 1>never discount the idea that some nice old man who's

0:29:54.320 --> 0:29:57.400
<v Speaker 1>very fond of wearing cuban shirts and carrying a cane

0:29:57.480 --> 0:30:03.920
<v Speaker 1>is going to come along and purpose we recreate murderous creatures. Well,

0:30:04.000 --> 0:30:07.520
<v Speaker 1>we just rewrote Jurassic Park, so wait, hold on, now,

0:30:07.560 --> 0:30:13.200
<v Speaker 1>the story is that the friendly old billionaire creates. Mr Say. Yeah,

0:30:13.800 --> 0:30:16.600
<v Speaker 1>he's like everyone in the world has the chance to

0:30:16.720 --> 0:30:19.440
<v Speaker 1>enjoy this. Mr Say, I'm ready. I'm ready to call

0:30:19.480 --> 0:30:24.680
<v Speaker 1>it right now that amusement park is gonna suck. Well, oh,

0:30:24.840 --> 0:30:31.240
<v Speaker 1>they just built the bolowing lick this surface. Well, with

0:30:31.320 --> 0:30:35.000
<v Speaker 1>that in mind, I will invite all of you to

0:30:35.160 --> 0:30:39.560
<v Speaker 1>infect us with your ideas for future episodes. If you

0:30:39.600 --> 0:30:42.280
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0:30:42.400 --> 0:30:45.040
<v Speaker 1>future episodes of Forward Thinking, whether it's the podcast or

0:30:45.080 --> 0:30:47.640
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0:30:47.680 --> 0:30:49.920
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0:30:50.240 --> 0:30:53.840
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0:31:02.240 --> 0:31:10.160
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0:31:10.200 --> 0:31:12.760
<v Speaker 1>on this topic and the future of technology. This is

0:31:12.800 --> 0:31:27.160
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0:31:27.160 --> 0:31:27.840
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